Vibrio splendidus: LTQ54_05405
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Entry
LTQ54_05405 CDS
T08240
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LTQ54_05405 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_05405 (recB)
Enzymes [BR:
vsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LTQ54_05405 (recB)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LTQ54_05405 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_25
AAA_12
AAA_11
ResIII
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
UOE85445
LinkDB
All DBs
Position
1:complement(1153314..1156988)
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AA seq
1224 aa
AA seq
DB search
MTTTSSVQVIAPQTLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTAAPLGDL
TEATRHHEPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSDDPVIAPLLQAI
EDHAGAAKTLLNAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFDNEFVTDESHLKAQVV
ADYWRKQFYPLPIQLAGEVRNIWGSPASLLADVNRYLTGSPLKLTVDAMSGDLQTLHNQN
LDKVKQLKALWCESEADFLALISGSDVNKRSYTKKSLPTWLEAVTAWAQSDTHDYQFPDK
LEKFSQATLIEKTPKGTAPQHAVFEAIEDFLNHPADLKAPLLAHAITHCRTMLAKAKQQK
QWLSFDDLLTQLSASIDVDEQSLLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPQ
CGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSANMVSAVNQVFMNSDS
PFIYDQDIPFLPVAASPSADKRQWVMNGETQHALTFWLQDAEDKPLPKGEYHKAMAEATA
SQIQTILTASQNQQAYFDNGKKQHAVNASDIAVLVRTGSEGRLIKNALSEQGIASVYLSN
RDSVFTSLVAQDIQRLLQAVLTPENDRALRASLASELFALDAASLDELNNDEVVWENVVN
EFREYRKLWLQRGVLPMLRSVISKRHLAERLLEEENGERSLTDLMHIGELLQQARQELDS
DYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVASY
REASEGKFYDHDSDTTVLDITGSDSALAQADKERLAEDLRLIYVALTRAVYGCFIGMAPL
RKGRSTKEPTGVHLSAMGYLVQNGQEQGIAELHQALSAIEGKNSSVLLSETPTAHEQVFV
QTEQVSEDLHASELKASIDRAWRITSYSGLVKQGSHGASHDATIEVSGFDIDSADEQDES
ELIEPERSIFTFPRGARPGTFLHTLFEDVEFTEPSTSEHNTQVITHLLESEQYELEWLPV
LQQLVDTVLNTALDGKNLKLSEKDSTQRLVEMEFLLPIEVLAASELNQTIQYHDPLSAKA
GDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQ
YQIYALALHRFLRSRVADYSYEQHFGGVYYLFLRGMDGQSQQGIFSAKPTLALLDEMDQL
IDGKVIDRRSAQLNDDETGQMGLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacaagcagtgttcaggtaatcgctccacagacactcgatacgatgacgttt
ccacttcatggcgcgcgtttaattgaagcatcagcgggtactggtaaaacatttactatt
gctggcttgtatttgcgcttactgctggggcacggcactgctgcgccgctaggcgatctg
actgaagccactcgacatcatgagccgctaaccgtagaccaaattctggtggtgaccttt
actgaagcggcaacggctgagttgagagatcgtattcgtgcgcgaatccatgatgcgcgc
attgcgtttgctcgcgggcaaagtgacgacccagtgattgctcctctgttacaagccatc
gaagatcatgctggtgcggcgaaaactctgcttaacgctgaaagacaaatggatgaggct
gcggtatacaccattcacggtttctgtcagcgaatgttgacccaaaatgcttttgaatca
ggaagccgttttgataatgaatttgtgaccgatgaaagccacctaaaagcacaagtggtt
gctgactattggcgtaaacagttctacccgctgcccattcaactggctggtgaggttcgt
aatatctggggttctcccgcctcgctattagcagacgtcaatcgttacctgacaggatct
ccgttgaaattgacggtagatgcgatgtcgggcgacctgcaaactctgcacaatcaaaac
ctagataaagtgaagcaacttaaagcgctgtggtgtgaatctgaagcggactttttggct
ttgatttcaggttcagatgtgaacaagcgtagctacaccaagaagtctttaccgacttgg
ttagaagcggtcacggcatgggcgcagagcgacactcatgattaccagtttccagataaa
ctagagaagttttcacaagctactttgattgagaaaacaccgaaaggtaccgcacctcag
catgccgttttcgaagcgattgaagatttcttaaatcacccagccgacttgaaagctcca
ttgctggcccatgcgattacccattgtcgaaccatgttagctaaggctaaacagcagaag
cagtggttatcgtttgatgatttgctgacccagttatccgcgtccattgatgtggatgag
caatcactgctggtggagagaatccgcaccttatacccagtggcgatgattgatgaattc
caagataccgatccgctgcaatacagtatttttagccgaatctacctcgataacccgcag
tgtggtctgtttatgatcggtgacccgaagcaggctatctatggcttccgcggcgcagat
atctttacctatatcaaggcgagaaaccaagttagtgctcactacacgctagggactaac
tggcgttcaagcgccaacatggtcagtgcggtaaaccaagtatttatgaattcggatagc
ccgtttatctacgaccaagacattccatttttgcccgttgctgccagcccatcggcagat
aagcgccaatgggtgatgaatggagaaactcagcacgcactgaccttttggctgcaagat
gctgaagataagcccttaccgaaaggcgaatatcacaaggccatggctgaggcgacggcg
agtcaaattcaaactattctgaccgcttctcaaaaccaacaagcctattttgataacgga
aaaaaacaacatgccgtgaatgcgagtgatattgctgtcttggttcgaaccggtagtgaa
ggtcgcctgattaagaacgcgttgtcggaacaaggcattgcgagtgtgtatttgtctaac
cgagatagcgtgttcaccagcttggtcgcacaagatattcaacgtttgttgcaggcggtg
ctgacacctgaaaacgaccgcgcgttgcgcgccagtttagcctcagagttgtttgctttg
gatgcggcatcattggatgaactcaacaacgatgaagtggtttgggaaaacgtcgttaac
gaatttcgagaatatcgtaagttgtggcttcagcgcggcgtgctgccaatgcttcgcagc
gtgatcagtaaaaggcatctcgcggaacgcttactggaagaagaaaatggtgagcgctca
ctcactgatttaatgcacattggcgaattgttgcaacaagcaagacaagaactcgacagt
gactatggcttgttgcgttggctggctgaagcaatctcagatgcacaaaatggtttaggc
ggcagtgaagacgacattcaacgccttgaatcagagagaaacttagttcaaatcgtcact
attcataaatcgaaaggcttggaatatgacctagtattcctgccgttcgtggcgagttat
cgtgaagcgagtgaaggtaagttctacgatcacgattccgataccacagtgcttgacatt
accggtagtgatagtgctttagcacaagccgataaagagcgattggcggaagacttacgt
ttgatttacgtggcgcttactcgtgccgtctatggatgttttattggaatggcaccgcta
cgcaaaggccgttcaaccaaagagccgaccggtgttcacttaagtgctatgggctacttg
gttcaaaacggacaagagcaaggcatcgctgagttacatcaagctttgtctgcgattgag
ggtaagaattcaagcgtattactgtctgaaactccgacagctcatgagcaagtgtttgta
caaacagagcaagtgagtgaagacttacatgctagtgaactgaaggcctccattgaccga
gcttggcgaatcaccagttactcggggttagtaaaacaaggcagccatggcgcgagccat
gacgccacgattgaggtgtctggcttcgatattgattcggctgatgaacaagatgagtcg
gaactgattgaacctgaacgttctatattcacgttccctcgcggcgctcgcccgggtact
ttcttacacaccttgtttgaggatgttgaatttaccgagccttcaaccagcgaacataac
acgcaagtaatcactcacttattagagtcggagcaatacgaactagagtggttacctgtg
cttcaacaactggtcgatacggtgctgaacaccgcgctggatggtaagaacttaaagcta
agcgagaaagactcaacgcaacgcttagttgagatggaattcttactaccgatcgaagtg
ctcgccgcatctgagctcaatcaaaccattcagtatcatgatcccttgtctgcaaaagcg
ggtgacttaggttttcaaactgtacaaggcatgctgaaaggcttcatcgatttggtgttt
gagcatcaaggtaaatactatgtactcgactggaaatcgaaccatctaggtgatgacgtt
gccgtctaccatggtgaagcattgaaatcggcgatggccgaccaccgctacgatctgcaa
tatcaaatctatgcgttggcattgcatcgtttcttacgcagccgcgttgcggattatagt
tatgaacaacatttcggtggggtttattacttgttcttaagaggaatggacggccaatct
caacaaggtattttctcggcgaaacccacattggctttgctcgatgaaatggatcaattg
attgacggtaaagtgatagacagacgttcagcgcaattgaatgacgacgaaactggacag
atggggcttctataa
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integrated database retrieval system
