Vibrio syngnathi: K08M4_23190
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Entry
K08M4_23190 CDS
T09193
Name
(GenBank) ATP-dependent DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K08M4_23190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_23190
Enzymes [BR:
vsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K08M4_23190
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K08M4_23190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
RecD_N
SH3_13
Viral_helicase1
Helicase_RecD
AAA_22
SLFN-g3_helicase
UvrD-helicase
AAA_16
nSTAND3
UvrD_C
DEAD
AAA_28
TrwB_AAD_bind
T2SSE
CbiA
PhoH
RNA_helicase
ABC_transp_aux
AAA
DUF87
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ARP39052
UniProt:
A0AA34XP91
LinkDB
All DBs
Position
1:complement(2532304..2534526)
Genome browser
AA seq
740 aa
AA seq
DB search
MTTTTNISTETVNSVKPVSLIPEQLMDVLKFLADKGSIRQLDYQFARFISQQATSHSQEV
GFLAGVVSHELGKGHICTQLIQLHTADLEQTADLAQLLGLYGETALQLNQKLLGIDWVTV
LQSSNLVGTTNDCVKPLMFDGQRVYLQRYWNYEVVLAETLNRLSKPVEFNIEQKKALTET
LNQLFARSYHFLFNALAKAEANQQTSQVLRQQLVCDHLDIVDEQALDWGSIDQAIVQAKQ
VTDLDVLDSLVPLSVCLNWQKVAAAVALSRRFAVISGGPGTGKTTTVTKLLSAMVEQSLS
QGKTPTIKLVAPTGKAAARLTESIGKAIEQLPLAPEVKANIPTESSTLHRLLGAIPNRAE
FRHNRRNPLHLDILVVDEASMVDLSMMYKLVDALPEHARLILLGDKDQLASVEAGAVLGD
ICSFNSAGYSSAQGNLIAEMTGFDAISKPRQVKTGSINPPAIADSLCMLQKSYRFDARSG
IGQLAKAINNGSANQVDQVFAKGFTDIENHPLSSDSYNLMLRTLVNEYGGYLNRMNVPLE
ELETQEARAKSVLDLFSQCRLLCSIREGDFGVKGLNHRIERALAARRLVNPHNDELWYHG
RPVMVTRNDHGLGLYNGDIGICMLEADASSSSSTDDNSAPRLKVYFELPDGSVKAVLPSR
VPDHETAYAMTIHKSQGSEFDLTLMILPPDFSPILTRELIYTGITRAKKRLMMFCDTNVL
KRGIKVKTDRVSGLGSRLTS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgaccactaatatcagcacagagacagtgaactcagttaagccagtttcactt
atccctgagcaactcatggatgtattaaagttcctcgctgataagggctcaattcgtcag
ctggattatcagtttgcccgttttatttctcagcaagcgacgagtcattctcaagaggtc
ggttttctcgctggggtggtgagccatgaactaggcaaggggcatatttgtactcagctt
atacagctacatacggcagaccttgagcaaacggcagatctagctcagttacttgggttg
tacggtgaaacggcactgcaattgaaccaaaaactgttgggtattgattgggtgactgtt
ctgcaatcatctaacctagttggaacaacgaatgactgcgttaagccgctaatgtttgat
ggacagcgtgtctacttacagcgttattggaactatgaagttgtgttggctgaaacgtta
aaccgtttaagtaagccagtagagttcaatattgagcagaagaaggcattgactgaaacg
ctcaatcagctttttgcacgtagttatcacttcctgtttaacgcattagccaaggctgaa
gcaaaccaacaaacctctcaggtattacgtcagcagttagtgtgtgaccatctagatatt
gtcgatgaacaggctttggattggggttctatcgatcaagcgattgttcaagcaaaacaa
gtgaccgatttagatgtgctggatagtctagtgccgttatctgtctgtttgaattggcaa
aaggtcgcggctgcggtggcgttaagtcgtcgcttcgcggtgatttctggtggaccgggt
accggtaaaaccaccacggtaactaagttgctttcggcgatggtcgagcaatcgctcagc
caaggtaaaacaccgacgatcaagctggtggcaccgacaggtaaagcggccgcgcgttta
actgaatcgattggtaaagcgattgagcaactgcctttagcgcctgaagtaaaagccaac
ataccaacggaatcgagcactttacacagattgcttggcgcgattcctaatcgagcggaa
tttaggcacaaccgacgcaatccacttcaccttgatatcttggtggtggatgaagcttcg
atggtcgatctgtcgatgatgtataagctggtggatgcacttcctgaacacgcaaggctg
attctacttggtgataaagatcagctcgcttctgttgaggcgggtgcagtgttaggcgat
atctgctcgtttaattctgccggttacagcagcgcgcaaggtaacttgattgcggaaatg
acaggctttgatgcgatttctaaaccaagacaagtcaaaacaggctcgattaatcctccg
gcaattgcagatagtttgtgtatgctgcagaagagttaccgtttcgatgcgcgttcaggt
atcggacagttggcaaaagcgatcaataacgggtctgcgaatcaggtcgatcaagtgttt
gctaaagggtttacggatatcgaaaatcatcccctatcgagtgacagctataacttgatg
ctgcgtactttagtcaatgagtatggtgggtatctcaaccgaatgaatgtgccgttggaa
gagttagaaactcaagaagcgagagccaaatcggtgctcgacttgttcagccaatgtcga
ttgctgtgttctattcgtgaaggagattttggtgttaaaggcctcaaccacagaatcgaa
agggcacttgccgcaagacgtttggtgaacccgcacaacgatgaattgtggtatcacggg
cgaccagtaatggtaacgcgcaatgatcatggcttgggcttatacaatggtgatattggt
atctgtatgcttgaggctgatgcaagtagctcttcttcaactgacgataactcagcccct
cgattaaaggtatattttgaattgcccgatggcagcgtaaaagccgtactaccaagtcga
gtgcctgatcatgaaaccgcctatgcgatgacgatacacaaatctcaaggtagtgaattt
gatctgactttgatgatcttaccgccagatttcagcccaattctaacgcgagagcttatc
tatacgggtattacgcgtgccaagaaacgactgatgatgttctgtgataccaatgtattg
aagcgtggtattaaggtgaaaacagatcgagtgagtggtttaggaagtcgcttaaccagc
taa
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