KEGG   Vibrio syngnathi: K08M4_23190
Entry
K08M4_23190       CDS       T09193                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vsy  Vibrio syngnathi
Pathway
vsy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vsy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    K08M4_23190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vsy03400]
    K08M4_23190
Enzymes [BR:vsy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     K08M4_23190
DNA repair and recombination proteins [BR:vsy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     K08M4_23190
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 RecD_N SH3_13 Viral_helicase1 Helicase_RecD AAA_22 SLFN-g3_helicase UvrD-helicase AAA_16 nSTAND3 UvrD_C DEAD AAA_28 TrwB_AAD_bind T2SSE CbiA PhoH RNA_helicase ABC_transp_aux AAA DUF87 NTPase_1
Other DBs
NCBI-ProteinID: ARP39052
UniProt: A0AA34XP91
LinkDB
Position
1:complement(2532304..2534526)
AA seq 740 aa
MTTTTNISTETVNSVKPVSLIPEQLMDVLKFLADKGSIRQLDYQFARFISQQATSHSQEV
GFLAGVVSHELGKGHICTQLIQLHTADLEQTADLAQLLGLYGETALQLNQKLLGIDWVTV
LQSSNLVGTTNDCVKPLMFDGQRVYLQRYWNYEVVLAETLNRLSKPVEFNIEQKKALTET
LNQLFARSYHFLFNALAKAEANQQTSQVLRQQLVCDHLDIVDEQALDWGSIDQAIVQAKQ
VTDLDVLDSLVPLSVCLNWQKVAAAVALSRRFAVISGGPGTGKTTTVTKLLSAMVEQSLS
QGKTPTIKLVAPTGKAAARLTESIGKAIEQLPLAPEVKANIPTESSTLHRLLGAIPNRAE
FRHNRRNPLHLDILVVDEASMVDLSMMYKLVDALPEHARLILLGDKDQLASVEAGAVLGD
ICSFNSAGYSSAQGNLIAEMTGFDAISKPRQVKTGSINPPAIADSLCMLQKSYRFDARSG
IGQLAKAINNGSANQVDQVFAKGFTDIENHPLSSDSYNLMLRTLVNEYGGYLNRMNVPLE
ELETQEARAKSVLDLFSQCRLLCSIREGDFGVKGLNHRIERALAARRLVNPHNDELWYHG
RPVMVTRNDHGLGLYNGDIGICMLEADASSSSSTDDNSAPRLKVYFELPDGSVKAVLPSR
VPDHETAYAMTIHKSQGSEFDLTLMILPPDFSPILTRELIYTGITRAKKRLMMFCDTNVL
KRGIKVKTDRVSGLGSRLTS
NT seq 2223 nt   +upstreamnt  +downstreamnt
atgacaacgaccactaatatcagcacagagacagtgaactcagttaagccagtttcactt
atccctgagcaactcatggatgtattaaagttcctcgctgataagggctcaattcgtcag
ctggattatcagtttgcccgttttatttctcagcaagcgacgagtcattctcaagaggtc
ggttttctcgctggggtggtgagccatgaactaggcaaggggcatatttgtactcagctt
atacagctacatacggcagaccttgagcaaacggcagatctagctcagttacttgggttg
tacggtgaaacggcactgcaattgaaccaaaaactgttgggtattgattgggtgactgtt
ctgcaatcatctaacctagttggaacaacgaatgactgcgttaagccgctaatgtttgat
ggacagcgtgtctacttacagcgttattggaactatgaagttgtgttggctgaaacgtta
aaccgtttaagtaagccagtagagttcaatattgagcagaagaaggcattgactgaaacg
ctcaatcagctttttgcacgtagttatcacttcctgtttaacgcattagccaaggctgaa
gcaaaccaacaaacctctcaggtattacgtcagcagttagtgtgtgaccatctagatatt
gtcgatgaacaggctttggattggggttctatcgatcaagcgattgttcaagcaaaacaa
gtgaccgatttagatgtgctggatagtctagtgccgttatctgtctgtttgaattggcaa
aaggtcgcggctgcggtggcgttaagtcgtcgcttcgcggtgatttctggtggaccgggt
accggtaaaaccaccacggtaactaagttgctttcggcgatggtcgagcaatcgctcagc
caaggtaaaacaccgacgatcaagctggtggcaccgacaggtaaagcggccgcgcgttta
actgaatcgattggtaaagcgattgagcaactgcctttagcgcctgaagtaaaagccaac
ataccaacggaatcgagcactttacacagattgcttggcgcgattcctaatcgagcggaa
tttaggcacaaccgacgcaatccacttcaccttgatatcttggtggtggatgaagcttcg
atggtcgatctgtcgatgatgtataagctggtggatgcacttcctgaacacgcaaggctg
attctacttggtgataaagatcagctcgcttctgttgaggcgggtgcagtgttaggcgat
atctgctcgtttaattctgccggttacagcagcgcgcaaggtaacttgattgcggaaatg
acaggctttgatgcgatttctaaaccaagacaagtcaaaacaggctcgattaatcctccg
gcaattgcagatagtttgtgtatgctgcagaagagttaccgtttcgatgcgcgttcaggt
atcggacagttggcaaaagcgatcaataacgggtctgcgaatcaggtcgatcaagtgttt
gctaaagggtttacggatatcgaaaatcatcccctatcgagtgacagctataacttgatg
ctgcgtactttagtcaatgagtatggtgggtatctcaaccgaatgaatgtgccgttggaa
gagttagaaactcaagaagcgagagccaaatcggtgctcgacttgttcagccaatgtcga
ttgctgtgttctattcgtgaaggagattttggtgttaaaggcctcaaccacagaatcgaa
agggcacttgccgcaagacgtttggtgaacccgcacaacgatgaattgtggtatcacggg
cgaccagtaatggtaacgcgcaatgatcatggcttgggcttatacaatggtgatattggt
atctgtatgcttgaggctgatgcaagtagctcttcttcaactgacgataactcagcccct
cgattaaaggtatattttgaattgcccgatggcagcgtaaaagccgtactaccaagtcga
gtgcctgatcatgaaaccgcctatgcgatgacgatacacaaatctcaaggtagtgaattt
gatctgactttgatgatcttaccgccagatttcagcccaattctaacgcgagagcttatc
tatacgggtattacgcgtgccaagaaacgactgatgatgttctgtgataccaatgtattg
aagcgtggtattaaggtgaaaacagatcgagtgagtggtttaggaagtcgcttaaccagc
taa

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