Vibrio syngnathi: K08M4_23200
Help
Entry
K08M4_23200 CDS
T09193
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K08M4_23200 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_23200 (recB)
Enzymes [BR:
vsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K08M4_23200 (recB)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K08M4_23200 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_11
AAA_25
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
ARP39053
UniProt:
A0AA34TRS5
LinkDB
All DBs
Position
1:complement(2534526..2538200)
Genome browser
AA seq
1224 aa
AA seq
DB search
MTTTSSAQVIVPQTLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDL
TEATRHHEELTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSDDPVISPLLQAI
DDHAGAAKTLLNAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFDNEFVTDESHLKAQVV
ADYWRKQFYPLPIQLAGEVRNIWGSPASLLADVNRYLTGSPLKLTVEAMSGDLQTLHNQN
LDKVKQLKALWCESEADFLALISGSDVNKRSYTKKSLPTWLEAVTAWAQSDTNDYQFPDK
LEKFSQATLIEKTPKGTAPQHAVFEAIEDFLSSPADLKAPLLAHAITHCRTMLAKAKQQK
QWLSFDDLLTQLSASIDVDEQSLLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPQ
CGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVSAVNQVFMNSDS
PFIYDQDIPFLPVAASPSADKRQWVMNGETQHALTFWLQDAEDKPLPKGEYHKAMAEATA
SQIQTILTASQNQQAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKNALSEQGIASVYLSN
RDSVFTSLVAQDIQRLLQAVLTPENDRALRASLASELFALDAASLDELNNDEVVWENVVN
EFREYRKLWLQRGVLPMLRSVISKRHLAERLLEEENGERSLTDLMHIGELLQQARQELDS
DYGLLRWLAEAISDAQNGLGGSDDDIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVASY
REASEGKFYDHDSDTTVLDITGSDSALAQADKERLAEDLRLIYVALTRAVYGCFIGMAPL
RKGRSTKEPTGVHLSAMGYLIQNGQEQGIAELHQALSAIEGKNPSVLLSETPTAHEQVFV
QTEQVSDDLQANELKASIDRAWRITSYSGLVKQGSHGASHDATIEVSGFDIDSADEHDES
ELIEPERSIFTFPRGARPGTFLHTLFEDVEFTEPATSEHNTQVITHLLESEQYELEWLPV
LQQLVDTVLNTALDGKNLKLSEKDSTQRLVEMEFLLPIEVLAASELNQTIQYHDPLSAKA
GDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQ
YQIYALALHRFLRSRVADYSYEQHFGGVYYLFLRGMDGQSQQGVFSAKPTLALLDEMDQL
IDGKVIDRRSAQLNDNETGQMGLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacaagcagtgctcaggtaatcgttccacaaacacttgataccatgacgttt
ccacttcatggcgcgcgtttaattgaagcatcagcgggtacgggtaaaacatttactatt
gctggcttgtatttacgcttactgctcgggcacggaactgctgcgccgcaaggcgatctg
acggaagctactcgacaccatgaggagctaaccgtagaccaaatattggtggtgaccttt
actgaagccgcaacggcagagctacgcgatcgtatccgtgcgcgaatccatgatgcacgt
atcgcgtttgctcgcgggcaaagtgacgatccagtgatttcccctttgttacaagctatc
gatgatcatgctggtgcggcgaaaactctgctcaatgctgaaagacaaatggatgaggcg
gcggtatacaccattcacggcttctgtcagcgtatgctgactcaaaatgcctttgagtct
ggaagccgttttgataatgaatttgtgaccgatgaaagtcaccttaaagcgcaagtggta
gctgactattggcgtaagcagttttacccgctgccaattcaactggcgggtgaagtgcga
aatatttggggctctcccgcttcgttattggctgacgtaaatcgctacctgacgggctct
ccactaaagctaactgtggaagcaatgtcgggtgacttgcaaactctgcacaatcaaaac
ctagataaagtgaagcaacttaaggcgttgtggtgtgaatctgaagcggactttttggct
ttgatttcaggttcagatgtgaacaagcgcagctacactaagaagtctttgcctacttgg
ttagaagcggtaacagcatgggcgcagagcgacaccaatgattaccagttcccagataaa
ttggagaagttctcacaagccacgttaattgaaaaaacaccgaaaggcacggcacctcag
cacgccgttttcgaagcgattgaggacttcttaagttctcctgcagacctgaaagcccct
ttgttggcacatgcgattactcattgtcgaaccatgttagctaaggcaaaacagcagaaa
cagtggttatcgtttgatgatttgttgactcagttatcagcgtcgattgatgtggatgag
caatcattgctggtggaaaggattcgcacgctttacccggtggcgatgatcgatgaattc
caagataccgatccgctgcaatacagtatttttagccgaatctatctcgataatccgcag
tgcggcttgtttatgatcggtgacccgaagcaggctatctatggcttccgtggcgcggat
atctttacctacattaaggcaagaaaccaagttagtgctcactatacgttaggcactaac
tggcgttcgagtgcggatatggtcagcgcggtaaaccaagtgtttatgaattcggacagc
ccgtttatctacgaccaagacattccattcttacccgttgctgccagtccatcggccgat
aaacgccaatgggtgatgaacggagaaactcagcacgcactcaccttttggctgcaagat
gctgaagataagcccttaccgaaaggcgaatatcacaaggcaatggctgaggcgacggcg
agtcaaattcaaaccattctgaccgcttctcaaaaccagcaagcctattttgataacggt
aaaaaacaacatgccgtgaatgccggtgatattgctgtcttggttcgaaccggtagtgaa
ggtcgcctaattaaaaatgcgttgtcggaacaaggcattgcgagcgtgtatttgtctaac
cgagatagcgtgttcaccagcttggtcgcacaagacattcaacgcctactgcaagcggtg
ctgacgcctgaaaatgaccgtgcattgcgtgcgagtttagcgtcagagttgtttgctttg
gatgccgcatcattggatgaactcaacaacgatgaagtggtttgggaaaatgtcgttaac
gaattccgagaatatcgtaagttgtggctgcaacgtggcgtattaccaatgcttcgcagc
gtgatcagtaaaaggcacctcgcggaacgcttactagaagaagaaaatggtgagcgctca
ctcactgatttgatgcacattggcgaactgttgcaacaagctaggcaggagctcgacagc
gactatggcttgttacgttggctagcagaagcgatatcagatgcgcaaaatggtttaggt
ggaagcgatgatgacatccaacgccttgaatcagaaagaaacttggttcaaatcgttacg
attcataagtcgaaaggtctggaatatgatttagtattcttgccgtttgtcgcgagttac
cgtgaagcgagtgaaggtaagttctacgatcacgattcagataccacagtacttgatatt
actggtagcgacagtgccttagcacaagccgacaaagagcgattagcagaagacctacgt
ttgatttacgtggcgctgactcgtgctgtttatggatgtttcattggcatggcaccgctg
cgtaaagggcgttcaaccaaagaaccaactggcgttcacttgagtgctatgggctacttg
attcaaaacggacaagagcaaggcatcgccgagttacatcaagctctgtcagcaattgag
ggtaagaatccaagcgtgctgctgtctgaaacgccgactgctcacgaacaagtctttgtg
caaacagaacaagtgagtgacgacttgcaggccaatgaacttaaagcttcaattgaccga
gcttggcgtattaccagttactcggggcttgtaaagcaaggcagtcacggtgcgagccat
gatgcgaccattgaggtgtctggcttcgatattgactctgccgatgagcacgatgagtca
gaactgattgagcctgaacgttctatattcacgttccctcgcggtgctcgccctggtact
ttcttacacaccttgtttgaggatgttgaatttaccgagccagcaaccagcgaacataac
acgcaagtaatcactcacttattagagtcggagcaatacgaactagagtggttaccagtg
cttcaacaactggttgatacggtgctgaacacggctttagatggaaagaacttaaagctg
agcgagaaagactcaacgcaacgattggttgagatggaattcttgttgccgatcgaagtg
ctcgccgcatctgaattgaatcaaaccattcaatatcacgatccgctatcagcaaaagcc
ggtgaccttggctttcaaaccgtgcaaggcatgttgaaaggctttatcgatttagtgttt
gagcatcaaggtaaatactatgtgctcgactggaaatcgaaccatctaggtgatgacgtt
gccgtctaccatggtgaagcattgaaatcggcgatggcagaccaccgatacgatctgcaa
tatcaaatctatgcgttggccttacatcgcttcttacgcagccgcgttgcggattacagt
tatgaacaacattttggtggggtttattacttgttcttaagaggaatggacggccaatct
caacaaggtgttttctcggctaaacctacattggctctgctcgatgaaatggatcaattg
attgacggtaaagtgatagacagacgttcagcacaattgaatgacaatgaaactggacag
atggggcttctataa
DBGET
integrated database retrieval system