Vitis vinifera (wine grape): 100262105
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Entry
100262105 CDS
T01084
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X2
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100262105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100262105
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100262105
mRNA degradation factors
5'-3' decay
Decapping complex
100262105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
100262105
NCBI-ProteinID:
XP_002273425
UniProt:
D7TCR4
LinkDB
All DBs
Position
6:join(23893866..23894024,23894104..23894144,23894225..23894274,23906146..23906290,23919338..23919394,23922865..23922991,23926075..23926548,23928115..23928171)
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AA seq
369 aa
AA seq
DB search
MSQNGKLMPNLDQQSTKILNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG
SLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNA
RECEEVANLFTRILNAYSKVPPKTKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTSSNVA
DVPDDPSFVNFFSEAVTIGNASSVAVTGQPYQSSATPPLPSCPPNAIPGTVPTLQLASPP
QSTSTSLIPLLDTSQPISTSNRTTNLVKPSSFFGPPSSSPLMMPPLSSAMPTAPPLHPPV
TLQRPYGAPMLQPFPPPTPPPSLTPTSMPAPNYGPVITRDKVREALLMLVQDNQFIDMVH
RALLNAHHS
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagaacgggaaattaatgccaaatctggatcaacagagcaccaaaatcctcaat
ctcactgttctccaacgaatcgatcccttcgtcgaagagattttaatcaccgccgctcat
gtcaccttctatgaattcaacatcgacctcagccaatggagtcgaaaggacgtcgaggga
tctctatttgtcgttaaaaggaacactcagccccggttccagttcattgtgatgaatcgg
cgcaacacagataatttggtggagaatctcttaggggattttgagtatgaagttcaggtt
ccatatctattatatcgaaatgcagcccaagaagtcaatggtatttggttctacaatgca
cgtgaatgtgaggaggtcgcgaatctttttaccaggatactgaatgcatactccaaggtg
cctccaaagacaaaggtgtcttcaacaaaaagcgagtttgaggaattggaagcagttcca
actatggcagtgatggatggtcctctagagccctcatcatcaacctcctcaaatgttgca
gatgttcctgatgatccttcatttgtgaacttcttcagtgaggctgtaacaattggcaat
gcttcaagtgttgcagttactggacagccttaccagtcttctgcaacaccccccctacct
tcttgtccacccaatgctattcctggcactgttccgaccttgcagcttgcttctcctcct
caatcaacatctacttctttgattcccctccttgatacctctcaacccatcagcacaagc
aaccgaaccactaatcttgtaaagccttcttcattttttggtcctccatcctcttcccca
ctgatgatgccacctctctcttctgccatgcctactgctccccccctccatccacctgta
accttacaacggccatatggtgctccgatgcttcaaccattcccaccacccactccccca
ccatcccttacacctacttctatgccagccccaaattatggaccagttatcactagagac
aaagtccgtgaagcacttctgatgcttgttcaggacaatcaatttattgatatggtccat
cgagcattgctgaatgcacaccactcgtga
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