KEGG   Vitis vinifera (wine grape): 100266900
Entry
100266900         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100266900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100266900
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100266900
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100266900
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 100266900
NCBI-ProteinID: XP_059597440
LinkDB
Position
13:complement(join(23063734..23063997,23073128..23073238,23074508..23075911,23076063..23076203,23076308..23076481,23077972..23078246,23088641..23088798,23092813..23092937,23093053..23093128,23094298..23094473,23094618..23096354,23096850..23097005,23097098..23097256,23099126..23099293,23100119..23100166,23108495..23108610,23108803..23108929,23109253..23109330))
AA seq 1830 aa
MEEDSSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCG
TAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLLAP
CCQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEV
MEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLK
KVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPN
ESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNM
KHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK
HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLL
SSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWT
ALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKF
FDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQA
ENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVE
GMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAM
SNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAA
YLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEV
CQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL
EQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLE
KAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVT
MVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKA
SEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGS
YGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGG
DWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQ
NTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRES
YDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQ
ATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGA
KGWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQS
QWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFT
SEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGID
YVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAG
GNRERSVIPEDGGNREQSVVPEETGSENRQ
NT seq 5493 nt   +upstreamnt  +downstreamnt
atggaggaagactcatcaactattttagatggtgaaataagtggaataagatttgggttg
gctacgagacaggaaatttgtattgcatcggttagtgactgtcccattagtcatgctagc
cagctcacaaatccatttctaggtttgccattggaatttggcaaatgtgaatcttgtggt
acagcagaacctggacaatgtgaaggtcattttggatatatcgaattgcctataccaata
tatcatcctggacatgttagtgaactgaaaaggatgttaagcttgctatgtttgaagtgc
ttgaaaatcagaaaaagcaaggtgacaaataatggtataactgaacaactgttagctcca
tgttgtcaggattctccccaagtttctgtaagggaattcagaccaactgagggagcttgt
ttcttggaattgaagataccatccagatcaagaccaaaggatggtttctgggacttttta
gccagatatggttaccgctatggtcacaacttatctagaattctgcttccttctgaggta
atggaaattctaagaagaattcctgaggatactcgaaagaagcttgtcaggaaagggtac
tttcctcaagatgggtatatcctgcaatacttgcccgtccctccaaattgtttgtctgtc
ccagacatttctgatggagtgagcatcatgtcttcggatctttctgtatcaatgttaaag
aaggttctcaagcaaattgaagtcattaagggctcgagatctggtgaaccaaattttgaa
tcccacaaaattgaggctaataatttgcagtcaagtattgagcagtatcttgaagtgcgg
ggaactgcaaagacatctcgctctttggatacaagatttgggagtagcaaagagccaaat
gaatcgtctacaaaagcatggcttgaaaagatgaggaccttgtttatcagaaaaggttca
ggtttttcttcgcgcagtgtaataactggtgacgcatataaaagggtcaatgaaattggt
ttaccatttgaaattgctcaaagaattacatttgaggaaagagttaatgtgcataacatg
aaacatttgcaaaatttagtggatgagaagttgtgcctcacctatagggatggtttatct
acatactccctgagggagggttcgaaagggcatacatttctaagacctggtcaagttgta
catcggcggatcatggatggggatattgtgttcattaataggccgcctactactcacaaa
cattcactgcaagcattgtcagtatatgttcatgatgatcatacagtcaagataaaccct
cttatttgtggacctctaagcgctgattttgatggtgactgtgttcacttgttctatcct
cagtctcttggggcaaaggctgaggttttagagctattctcggtggagaaacagttgctt
agctctcatagtggtaacctcaacttgcagctggccactgattcattgttgtctctaaaa
gttctctttgagagatatttcttgaacaaagcagctgctcagcagttagtgatgtttgtt
tctatgtccttaccgaggcccgctttgttgaagtctccttgttctggcccttgttggact
gccttgcagatattgcagactgccttaccgtcttactttgattgtattggagagaggcac
tggattagcaaaagtgctatattgaaagttgattataatagggatgttttgcaatctttg
gtcaatgaaattgtcacatccattttctctgagaaaggtcccaatgaggtcttgaagttc
tttgattctttacagcctttgttgatggaaaatttgttttcagagggtttcagtgtcagc
ttggaggatttttccattcccagtgaggtcacacaaaatatccagaaaaatgttgaggac
atttcatcattgttgtataacttaaggtcgatgtacaatgaactgctacagttgcaggca
gagaatcacttgagacttaccaaggttcctgttgctaatttcattttgaattcatctgca
ctgggtaatttaattgattccaagagtgattcggctattaacaaggtagttcaacaaatt
gggttcctgggacaacaactttcagaaaagggtaagttctattccaggaccttggttgag
ggcatggcttatctattcaaaagcaagtatccttttcatggggctgactacccttctggg
gaatttggattaattagaagctgtttcttccatggcttagatccttatgaggaaatggtt
cattcaatttccacaagagaaataattgtacgatcatcaaggggcttgtctgaaccagga
actttgtttaaaaacttaatggctattcttcgagatgttgttatctgttatgatggtaca
gtgaggaatgtttgtagcaattcaattatccaatttgagtatggagtgaaggctagaact
aaaccccagcatttcttccctgctggtgagcctgttggtgttttagctgctacagctatg
tcaaatcctgcatacaaagctgttcttgattcttctccaagcagtaattcctcatgggag
ctgatgaaggaaatcttgctctgtcaagtcaactttaagaatgatcttattgatcgacgt
gttattttatacttgaatgactgtgattgtgggagaaagtactgccgagaaaatgcggca
taccttgttaagaatcaattgaaaaaggccagtcttaaagatactgctgtggaattcatg
attgaatatgtgaagcagcatgctgtctcgggaagttctgaacctggtacaggccttgtt
ggacatattcatctaaacaagttgttgttgcaagatttgaacgttagtatgcaagaggtt
tgccaaaagtgtgaagagaccattaattcattccggaagaagaagaatgttggtcctttc
tttaagaagataattctatctttcagggagtgttgcactttccagcattcttgtcaaagc
aaagggtcagacatgccatgcttgttgttcttttggcaaggcaaccgtgatgataattta
gagcaaattttacatatactcgctcacaaaatttgcccagttctgctgcagactattatc
aaaggtgactctcgtgtttgtacggtgaacataatctggatcagtccagataccacgact
tggataagaaacccttgcaaaagtcggaagggtgaactagccttggacatagttcttgag
aaagcagctgttaagcaaagaggtgatgcatggaggattgtccttgatgcctgtcttcct
gtactccatttgattgacactaggcgttccataccatatgcaataaaacaggtgcaggaa
ctgctagggatttcttgtgcttttgaccaagctgttcagcgcctttcaaaatcagtgacc
atggttgcaaaaggggtgctcaaagagcatcttattctcttggcaaatagtatgacatgt
gcgggaaatttaatcggtttcaattcaggtggttataaagcactatctcgtgcattgaat
cttcaagtaccattcactgaagccaccctttttacaccaagaaaatgttttgagaaggct
tctgaaaagtgtcatactgactctttatcaagcattgttgcatcatgctcttggggtaaa
catgtgacagttggtacaggatctcgatttgatgttctttgggatacaaaagagattggg
cctgctcaagatggtggaattgatatttatagcttcctccatttagtgagaagtggttca
tatggaaaagaaccagatactgcttgtctcggtgcagaagttgaggatttaatattggaa
gatgaaaatctggagttgggcatgtccccagagcatagttctaactttgaaaagccagtt
tttgaagatagtgctgaattccagaacacttgggagaatcacgtgcctggtagtggtgga
gactgggctgtcaaccaaaataaagagactactgcatcaactttgaagcctagtgcatgg
tctagttggggcactgataaagtaaccatgaaggatactttctctacaagggagccagat
gaatcttccagatctgctggttgggatgataaggggacttggggaactgataaagcacaa
aatacagcctttaggaggacacacgaagattctcccagatcttctggtagggatgaaaca
tttagggatggacgtcctcagtttgcgtcgtctgcatggggaaaaaagattgatgaagct
gataaaactggatggaataaaaatgatggtaagcctcagatggacaaactgagggagtct
tatgattgggattgtaaggtggcccaggaaaaaacaactcaatcaacctatggtggtatt
tcttcaaccactggagactggaagaagaatgaactgcaaatggaggtggtgcaacatgat
gaatctcctgtcaatgagcattcttgggatgctaatttacctgaagacccattagctcag
gcaacaacttcagttggttgggattcttcaactggcaaggactggactaaacgtaaattg
caatctccttcagagcaacagagagatccagcaataaaatcatggagttctagccataat
gtaatgaaagaacaatcaaaccaaccagcaagcacacatggttgggattctcctggagcg
aaaggttggaatgatgttgaagagcaatctcaatggaaccagagagggtccgctgttaaa
aatgatcaaagtgaaagttcacatggttggggcccttcaaatgagcaaaaccaactgcca
agctcgcaaggttggggttctcccaatgctggagctgggcatgaaagtgagacacaatct
caatggggacagccaagtgggaagaaaagtcgtcctgaaggttcacgtggttggggctct
aataacacagaatggaaaaacaagaagaatcgacccaataagccccagggaccattaaat
gatgattacagtgcaggtggaatatttactgctactagacagcgtgtagatattttcact
tctgaagagcaagacattctcttggatgtcgaaccaatcatgcagtctattagaagaata
atgcaccaagcagggtacaatgatggggatccactatcagccgatgatcaatcgtatata
ctcgataaagtttttaataaccatcctgataaagctgtaaaaatgggcactggaattgat
tatgtcatggttagcagacatagcagtttcttggagagcaggtgcttctatgttgtctca
actgatggtcacaaagaagacttttcataccgcaaatgtctggagaacttcatcaaggaa
aagtatcctgacaatgctgaaacattcattggaaaatattttagaagacctcgcgctgga
gggaaccgggagcgaagtgtcattcccgaggatggaggaaacagggagcaaagtgttgtt
ccagaggagactgggagtgagaacaggcagtag

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