Vitis vinifera (wine grape): 100268119
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Entry
100268119 CDS
T01084
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
vvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100268119
03420 Nucleotide excision repair
100268119
03430 Mismatch repair
100268119
03440 Homologous recombination
100268119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vvi03000
]
100268119
03032 DNA replication proteins [BR:
vvi03032
]
100268119
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100268119
Transcription factors [BR:
vvi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100268119
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100268119
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100268119
MMR (mismatch excision repair)
100268119
DSBR (double strand breaks repair)
HR (homologous recombination)
100268119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF5521
zf-like
Motif
Other DBs
NCBI-GeneID:
100268119
NCBI-ProteinID:
XP_002278273
UniProt:
D7TCH6
LinkDB
All DBs
Position
11:join(1112685..1112944,1113365..1114973)
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AA seq
622 aa
AA seq
DB search
MPVNLTPNAIAAINGGDVNSKPLVQVLDIKLIGNSQERYRFLLSDAVATQQAMLATQLND
RVKSGQVRKGSVIQLIDYICSVVQNRKIIVVLNMETIIPECEIIGNPKMNTESHSTAQKE
FPGGNRARSVGVTNNNLSVQNGGNKMPSFRPSVQPPFQPPPNYKSHGTILKNEAPARIIP
IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF
YDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRP
ISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFC
NREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDR
GGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCY
AACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQE
AGEEILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVV
KADKVNYTSESRHLLDLISKCP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctgacgccgaacgcgattgcggcaatcaacggtggagatgtgaattca
aagccgctcgtgcaggttctggacatcaagctcattggaaactcgcaggagcggtaccga
tttctgctttccgatgccgtggcgactcagcaggccatgctggcgactcaactcaatgac
cgagtcaagagcggacaagttcgcaaaggatctgtaattcagttgattgattatatctgc
agcgttgttcaaaatcgcaagattattgttgtgttgaacatggaaactataataccagaa
tgtgaaataattggaaacccgaaaatgaatactgaatctcattcaacagctcagaaagag
tttcccggtggcaatcgtgcaagatcagtgggtgttactaataataatttgagtgtccaa
aatggtggtaataagatgccgagttttcgaccttctgttcaacctcctttccaaccgcct
ccaaattacaaaagtcatggcacaattttgaagaatgaggcaccagcacggataattccg
attgctgctttgaatccttatcaggggcggtgggctatcaaggcaagggtaactgctaaa
ggtgatctgcggagatacaacaatgccaggggagatgggaaggttttctcatttgacctc
cttgattctgatggaggggagattcgagtgacctgctttaatgcagttgttgatcggttt
tatgatactattgaggttgggaaagtttacttgatatcgaagggtagcttaaaacctgca
cagaagaacttcaaccacctgaagaatgaatgggaaatatttttggaagcaagctcaagt
gtggagctgtgcccagatgaagatggctcaattccaaaacagcagttctcctttagacca
atcagtgaaattgagaatgttgaaaacaattccatacttgatgttattggcattgtaata
tcagtgaatccttcagtccccatcttgagaaagaatggtatggaaactcagcgaagaatt
gtaaatctaaaggatggctctggtcggagtattgagctcaccatgtggggggaattctgc
aacagggaaggtcatcagctgcaggagatgattgattctggatctttcccagttttggct
gtgaaatccggaaaggttaacgacttcagtgggaaatctgtaggcacaatctctgccaca
cagctcttcataaatccagactttacagaggcttgtaacttgagagagtggtttgatcga
gggggaaagaatgctgcttctcagtccatctctagagatatcatgcctgcaggatctagg
aatgagatacgtaaaactgtgtctcagatcaaggatgaaggtcttggaagatcagataaa
ccagactgggtcacagtgaaggcaaccatatcattcattaaaacagacactttctgttat
gcggcttgcccattgatgattggagatagacagtgtaataagaaagtgacaaggtcaggg
aacacaagatggcaatgtgacaggtgcaatcaagaattcgaggactgtgattatcgatat
cttcttcaagctcaagtacaagaccatacaggattgacttgggtgacagctttccaggaa
gccggtgaagagatcttgggttgctcagcaaaagagctgtacttgttgaaatacgaggag
gaggatgatttccggtttggagaaataatccggagcagactccttaaccaatttttgttc
agacttaagatcaaagaggaaatgtatggtgaagaacagagggtgaagatcactgttgtc
aaagcagacaaggtgaactatacttctgaaagtaggcatctgcttgatctgatctcaaag
tgcccttaa
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