Vibrio ziniensis: G5S32_11545
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Entry
G5S32_11545 CDS
T07449
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
G5S32_11545 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vzi03400
]
G5S32_11545 (recB)
Enzymes [BR:
vzi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
G5S32_11545 (recB)
DNA repair and recombination proteins [BR:
vzi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
G5S32_11545 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
SLFN-g3_helicase
AAA_25
ResIII
MGDG_synth
Motif
Other DBs
NCBI-ProteinID:
QIH42583
UniProt:
A0A6G7CKL4
LinkDB
All DBs
Position
1:complement(2497047..2500697)
Genome browser
AA seq
1216 aa
AA seq
DB search
MNVPSNIVATPLEAMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGNEQNRHQVPLT
VDQILVVTFTEAATAELRDRIRARIHDARLAFSRGHSNDPVIEPLLNDFSDHAQAAKLLL
DAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFSNEFVTDESHLKAQVVADYWRRQFYPL
PLNLAAEVRRLWSSPAALLGKIGGYLTGIPLSLTTPMMDGDLAGLHQQNLAKIDAIKQQW
LSALEEIEPSITGSDLHKNSQNALLKRIESLTQWASSATHDLLVPEALSDFAQSQLLEKS
KKGNPPLLEVFNVIEQFKAQPITIEAPLTAHAIHHCRAMLAKAKASKQWLSFDDLLSQLS
ASIDGDEQGLLAERIRHLYPVAMIDEFQDTDPLQYSIFSRIYLNTPECGLFMIGDPKQAI
YAFRGADIFTYIKARNQVAAHYTLGTNWRSSSDMVAAVNQVFELPDSPFIYDSDIPFLPV
DANPFAAKKEWLLNGEKQPALTYWLQEADGSPVTKGNYLEVMAQATASQIQTILTAAQQN
KALFVNGKSSSNGKSSSNGKSIQAGDIAVLVRTGNEGRMIKEALAKQGIASVYLSNRDSV
FTSSIAQDIQRLLQAVLTPENDRALRAALASPLFALNSKQLDALNNDENEWENAVNQFKQ
YRRLWVERGVLPMLRSVLSLRHIAERWLEEVDGERNLTDFMHISELLQQATQDIDSDHGL
LRWLAQTISDAEQGMGGNDDAIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVVSYREAS
EGKYYDSNSGQTLLDITGDKQALQQADKERLAEDLRLIYVALTRSVYGCFIGVAPLRNGR
STKEPTGVHHSAIGHLLQNAQEGGIDLLTQSVEAHANKLSCVLVTSPPEPLDTIFTPVVD
PLPELKAKELNSEIDRYWRITSYSGLVKQGSHQKEHDATVEIGGFDVDSAEEHDELTPIE
KERTIFNFPRGARPGTFLHTVFEEVEFTEPATSEHNTKIISHLLELEQLEMEWLPVIQKL
VDDVLATPLDGKKLQLNQKLSHQRLVEMEFLLPIEVLTAPALNRVVQRHDPLSAKAGDLG
FYTVQGMLKGFIDLVFQHEGKYYVLDWKSNHLGDEVEAYHGERLASAMAEHRYDLQYQLY
ALALHRFLQSRLANYDYNKHFGGVYYLFLRGIDGKAQHGIFNAKPSQTMLEELDLLIQGK
EPDERTNAAGQMELGL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttccttccaatatcgtagcaacgccactcgaagcgatgacgtttcctttgcat
ggtgcgcgtttgatagaagcttctgccggtacaggtaaaacatttactattgctggtctt
tatttgcgtctgttgttaggtcatggaaatgagcaaaatcgccatcaagtacctctaacc
gtcgatcaaatcttggttgtaacctttaccgaagcggcaaccgctgagttgcgtgatcgt
atccgtgctcgtattcatgatgcacgattagccttttcaagaggtcacagcaacgatcct
gtgattgaacctctgcttaatgatttcagtgatcacgctcaggcggcaaaactgctgctc
gatgcagaacgtcagatggatgaagcggcggtgtataccattcacggcttttgccaacgc
atgctgacacagaacgcgtttgaatctggcagccgttttagtaatgagtttgtcaccgat
gaaagtcatctcaaagcgcaggtagtcgcagattactggcgtcgtcagttttaccctcta
ccactcaatttagccgctgaagtccgtcgtttatggtcatcgccagcggcactgctagga
aaaattggtggttatttaacgggtatacccttgtctctgaccacgccgatgatggacggt
gaccttgccggtttacaccagcaaaatttggctaaaattgacgccattaagcagcaatgg
ctgagtgcattggaagaaatagaaccgagcattacaggctccgatctgcataaaaactcg
caaaatgccttgctaaaaaggattgaaagcctgactcagtgggcgagttcggcaacgcat
gatttgctggtgcctgaagcactatctgactttgctcaaagccaactattggaaaaatct
aagaagggtaatccgccactacttgaagtttttaacgtcatcgagcagttcaaagcacag
ccaatcacgattgaagcgcctttaacagcacacgctatccatcactgtcgagccatgctg
gcaaaagctaaagcaagtaaacagtggttgtcgtttgatgatcttttaagccagctttct
gcctctattgatggtgatgagcaaggtttgttggctgaacgcattcgtcatctttacccg
gttgcgatgatcgatgaattccaagataccgatccgctgcaatacagcatttttagccgt
atctatctgaacacacctgaatgtggtctgtttatgattggtgaccctaagcaggcaata
tacgcattccgtggcgcagatatttttacctatatcaaagcgcgcaatcaggtggcagcg
cactacacattaggcaccaactggcgctcaagctcggatatggtggcagccgtgaaccaa
gtgtttgagttgccagatagtccgtttatttacgacagcgatattccttttttgcctgtc
gatgccaacccttttgcggcaaaaaaagagtggctactgaatggagagaagcaacctgcg
ttgacctattggctacaagaagcggatggttctccagtaaccaaaggcaactatttagaa
gtgatggcgcaggcaacagcaagccaaatacagaccattttgactgcggcacagcaaaat
aaggcgctgtttgttaacggtaaaagtagtagtaacggtaaaagtagtagtaacggtaaa
agcattcaggcgggtgacattgcggtactggtgagaacgggtaacgaaggtcgaatgatt
aaagaagccttggctaaacaaggtattgccagtgtgtatttgtctaaccgtgacagtgta
tttaccagctcgattgctcaagatattcaacgtttgctacaagcggtgctgacaccagaa
aatgacagagcattacgtgcagcattagcttctccgctgtttgctctgaactccaaacaa
cttgatgcactcaataacgatgaaaacgagtgggaaaacgctgttaaccaatttaaacag
tatcgccggctttgggttgaacggggtgtgctgccaatgctgcgctcggttttaagcctt
cgtcatattgccgaacgctggttggaagaggtggatggcgaacgaaatcttaccgatttc
atgcacatcagtgaattgttgcaacaagcgactcaagatatcgacagtgaccacggtttg
ctgcgttggctcgctcagacaattagcgatgctgaacaaggaatgggaggcaacgacgac
gccatccaacgtcttgagtccgaaagaaacttagtacagatcgtcactatccataaatcc
aaaggtttggaatacgatttagtgtttctaccatttgtggtgagttaccgagaagcgagc
gaaggcaaatattacgacagcaatagtggtcagactctgcttgatatcactggcgataaa
caagcgttgcaacaggcggacaaagaacgtttggctgaagatttacgtttgatttatgtg
gcactaacgcgttctgtctatggctgttttatcggtgtcgcaccattacgcaatggtcgt
tcaactaaagagccaacgggtgtgcaccacagtgctatcggtcatcttttacaaaacgcg
caagaaggcggaatcgatcttcttactcaatccgtggaagcacatgcaaacaagttatct
tgcgtcttggttacctctcctccagaacctctcgacaccatcttcacaccagttgtagat
ccgttgccagagcttaaagccaaagagctaaacagtgagattgaccgctattggcgcatt
accagttattcaggcttggtgaaacaaggcagccatcaaaaagaacacgatgcaacggtc
gaaatcggtggctttgatgtggattcagccgaggagcatgatgagcttacgcccatagaa
aaagagcgcaccatctttaacttcccgcgaggtgctcgccccggtactttcttgcacact
gtgtttgaagaggttgagtttaccgagccagcaaccagtgagcacaacactaaaatcatt
agtcatctgctggaattagaacagttagagatggaatggttacctgtgatccaaaagctg
gtagacgatgtgttagccacccctcttgatggtaaaaaattacagctaaaccaaaagttg
tcccatcagagattggtagagatggagtttttactgccgattgaagtgctgactgctcct
gcgctaaatcgcgtggttcagcgtcatgatcctttatcagctaaagctggagatttaggt
ttctacacagttcagggcatgttgaaaggttttatcgacttagtgtttcagcacgaaggt
aaatactatgtgcttgactggaagtcgaaccatcttggtgatgaagtagaggcttaccac
ggagagcgtttagcatcagcaatggcggagcatcgttacgatctgcaatatcaactttat
gctttggcattacaccgctttttgcaaagtcgtttagcaaattatgactacaacaaacac
tttggtggtgtttattacttgttcctgcgtggtattgatggcaaagcacagcacggtatt
ttcaatgcgaaaccaagccaaacaatgttagaagaattggatttattgatacaaggtaaa
gagccggatgaacgcacaaacgctgctgggcaaatggagctaggattatga
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