Xanthobacter autotrophicus: Xaut_3364
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Entry
Xaut_3364 CDS
T00581
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xau
Xanthobacter autotrophicus
Pathway
xau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Xaut_3364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xau03021
]
Xaut_3364
03400 DNA repair and recombination proteins [BR:
xau03400
]
Xaut_3364
Enzymes [BR:
xau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Xaut_3364
Transcription machinery [BR:
xau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Xaut_3364
DNA repair and recombination proteins [BR:
xau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Xaut_3364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABS68593
UniProt:
A7IKQ0
LinkDB
All DBs
Position
3743884..3747960
Genome browser
AA seq
1358 aa
AA seq
DB search
MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRDDDGLQAVFKSV
FPISDFSGASMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPETGAKSV
KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLLYALGLDNEEILSTFYEKIPFTREK
GGWRMPFDPKRMKGYKAVADLIDADTGEVVLEAGKKLTVRAGRQLAEKGLKALKISDEEM
IGQYIAEDLVDLTSGEIHAEAGEEITEKTLKLLEETGYNEIPVLDIDHVNTGAYIRNTLT
ADKNVTREDALFDIYRVMRPGEPPTLDSAQAMFHSLFFDSERYDLSAVGRVKMNMRLDLD
CPDTVRVLRRDDILSVIRTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRME
RAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPYR
RVVDSKVTDEVVYLSAMEEGKYYVAQANIPLDKDGRFEEDLIVCRHAGDVLLVAPDRVDF
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARDS
GAAIAARRTGVIDQVDATRIVIRATEEADPSKSGVDIYRLMKFQRSNQSTCINQRPLVRV
GDQVKKGDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSENIAKEDVFTSIHI
EEFEAMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGES
PMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIEREEI
ERLAKDRDDEQAILDRNVYGRLIEILDGKTAIAGPKGFRKETVVTREILTEYPRSQWWLF
AVADDAIMAELEAIRAQYDDSKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLGWA
CAGLGRQVAAAMEAYYGKQDLKPLRDRLETIYGKDEIEQLKDGELPELGENLRKGVPMAT
PVFDGAHEADIEQQLEKAGLDASGQSTLYDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVDLENS
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaacgttcaccggtcgtaagcggatccgcaagttcttcggcaagatcaaggaa
gtggccgagatgccgaacctcatcgaggttcagaaggcatcctacgaccagttcctccag
atcgaggaacccaagggcggacgcgacgacgacggcctgcaggcggtgttcaagtcggtg
ttccccatctccgacttctccggcgcctccatgctggagttcgtgcgctacgagttcgag
ccccccaagtatgacgtggacgagtgccgccagcgcggcatgacctttgctgccccgctc
aaggtgaccctgcgcctcatcgtgttcgatgtggatcccgaaaccggcgccaagtcggtg
aaggacatcaaggagcaggacgtctacaccggcgacatcccgctcatgaccatgaacggc
acgttcatcgtgaacggcaccgagcgcgtcatcgtctcccagatgcaccgttcgccgggc
gtgttcttcgaccacgacaagggcaagacccactcctcgggcaagctcctgttcgccgcc
cgcatcattccctatcgcggctcctggctcgacatcgagttcgacgccaaggacatcgtg
ttcgcccgcatcgaccggcgccggaagatcccggtgacgagcctgctctatgccctcggc
ctcgacaacgaggagatcctctcgaccttctacgagaagatccccttcacgcgggagaag
ggcggctggcgcatgccgttcgatcccaagcgcatgaagggctacaaggcggtcgccgac
ctgatcgacgccgacaccggcgaagtcgtgctcgaggccggcaagaagctgaccgtccgc
gccggccgccagctggccgagaagggcctcaaggccctcaagatctccgacgaggagatg
atcggccagtacatcgccgaggacctggtggatctcacctcgggcgagatccacgccgag
gcgggcgaggaaatcaccgagaagacgctgaagctgctcgaagagaccggctacaacgaa
atcccggtgctggacatcgaccacgtcaacaccggcgcctacatccgcaacacgctgacc
gccgacaagaacgtgacccgcgaggacgcgctcttcgacatctaccgcgtgatgcgcccg
ggcgagccgccgacgctggattcggcgcaggccatgttccactcgctgttcttcgacagc
gagcgctacgacctgtccgcggtcggccgcgtgaagatgaacatgcgcctcgacctcgac
tgccccgacacggtgcgggtgctgcgccgcgacgacatcctctcggtcatccgcacgctg
gttgagctgcgcgacggcaagggcgagatcgacgacatcgaccacctgggcaaccgccgc
gtgcgctcggtgggcgagctcatggagaaccagtaccgcgtcggcctgctgcgcatggag
cgcgccatcaaggaacgcatgtcctccgtggacatcgacaccgtgatgccgcaggacctc
atcaacgccaagccggtggcggcggcggtgcgcgagttcttcggctcgtcccagctctcg
cagttcatggaccagaccaacccgctttccgagatcacgcacaagcggcgtctctcggcg
cttggcccgggcggtctgacccgtgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acccactacggccgcatctgccccatcgagacgccggaaggcccgaacatcggcctcatc
aactcgctggccaccttcgcccgcgtgaacaagtacggcttcatcgaggcgccttaccgc
cgcgtggtggattcgaaggtcaccgacgaggtggtctatctctccgccatggaggagggg
aagtattacgtcgcgcaggccaacatcccgctcgacaaggacggccgcttcgaggaagac
ctcatcgtctgccgccatgcgggcgacgtgctcctggtcgcccccgaccgcgtcgacttc
atggacgtgtcccccaagcagctggtctcggtggccgcggcgctgatcccgttccttgag
aacgacgacgccaaccgcgcgctcatgggctccaacatgcagcgccaggcggtgccgctg
gtgcgctcgcaggcgccgctggtgggcaccggcatggaagccgtggtggcccgggattcg
ggcgccgccatcgccgcccgccgcaccggcgtgatcgaccaggtggacgccacccgtatc
gtcatccgcgccacggaagaggccgatccgtccaagtcgggcgtcgacatctaccggctg
atgaagttccagcgctccaaccagtccacctgcatcaaccagcgtccgctggtgcgcgtg
ggtgaccaggtgaagaagggcgacatcatcgccgacggtccctcgaccgagctcggcgaa
ctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgaa
gattcgatcctgctctcggagaacatcgccaaggaggacgtgttcacctcgatccacatc
gaggaattcgaggccatggcccgtgacaccaagctcgggccggaggaaatcacccgcgac
attcccaacgtctcggaagaggcgctgaagaatctcgacgaggcgggcatcgtctatatc
ggcgcggaagtgcgcgccggcgacatcctcgtgggcaagatcacgcccaagggcgaaagc
ccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgagaaggccgccgacgtg
cgcgacacctcgctgcgcctgccgcccggcaccaccggcaccatcgtggaagtgcgcgtg
ttcaaccgccacggcgtggacaaggacgagcgtgccctggccatcgagcgggaagagatc
gagcgtctcgccaaggaccgtgacgacgagcaggcgatcctggatcgtaacgtctacggc
cgcctgatcgagatcctcgacggcaagaccgccatcgccggcccgaagggcttccggaag
gagaccgtggtcacccgcgagatcctcaccgaatacccgcgctcgcagtggtggctgttc
gcggtggccgacgacgccatcatggcggagctggaagccatccgcgcccagtatgacgac
tctaagaagcgtctggagcagcggttcctcgacaaggtcgagaagctgcagcgcggcgac
gaactgccccccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaagatc
cagcccggcgacaagatggccggccgccatggcaacaagggcgtggtctcgcgcatcgtg
cccgtggaggacatgccgttcctcgaggacggcaccaacgtggacatcgtgctgaacccg
ctgggcgtgccctcgcgcatgaacgtcgggcagatcctggagacgcacctgggctgggcc
tgcgcgggcctcggccggcaggtggccgcggcgatggaagcctattacggcaagcaggac
ctcaagcccctgcgcgatcgccttgagaccatctacggcaaggacgagatcgagcagctc
aaggacggtgaactgcccgagctgggcgagaacctgcgcaagggcgtgcccatggccacc
ccggtgttcgacggggcgcacgaggccgacatcgagcagcagctggaaaaggcgggcctt
gatgcctccggccagtccacgctctatgacgggcgcaccggcgagccgttcgatcgtaag
gtcacggtgggctacatctacatgctgaagctccaccatctggtcgacgacaagatccac
gcccgctccatcggcccctactcgctggtcacccagcagcccctgggcggcaaggcgcag
ttcggcggccagcgcttcggcgaaatggaagtgtgggcgctcgaagcctacggcgcggcc
tacaccctgcaggagatgctgacggtgaagtccgacgacgtggccggccgcaccaaggtc
tacgaggccatcgtgcgcggcgaggacacgttcgagagcggcattcccgagagcttcaac
gtgctcgtgaaggaaatgcgctccctcggcctcaacgtcgacctcgagaacagctga
DBGET
integrated database retrieval system
