Ahniella affigens: C7S18_15095
Help
Entry
C7S18_15095 CDS
T05483
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xba
Ahniella affigens
Pathway
xba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7S18_15095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xba03400
]
C7S18_15095
Enzymes [BR:
xba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7S18_15095
DNA repair and recombination proteins [BR:
xba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7S18_15095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_25
RecG_dom3_C
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVP98433
UniProt:
A0A2P1PUB3
LinkDB
All DBs
Position
complement(3931876..3935316)
Genome browser
AA seq
1146 aa
AA seq
DB search
MQPKFLSLPLPAAGQQRAYVAVPGGSGLSLAIADTARQHEGLVLVVVADSHAAHQLEAEL
GLFAPADLPILHFPDWETLPYDVFSPHPDIVSARIESLYRLPGLKRGILVVPVQTLCQRL
PPLSFVQGESLVLSVRQQLDLETERRRLDAAGYRHVPKVLEPGDYATRGALLDIYPSGSR
EPYRIELLDDEIDSIRTFDPETQRSREKVQNIRLLPAREFPLTAEATKAFRLRLADRFDI
DLRRSPLYQDMREGAAPAGIEYYLPLFFEQMATLFDYLGVTPLIVCAHNVLQAADDNARQ
TEARYQSRRHDIERPVLAPAELFLSPEQLRSALNKHRRIELQPPESTGELIRMPLSTAPM
LPIQRKHEDPAQDLKLFLRAYPGRVLIAADSAGRREALLDLLASFGIKPEVCGDWQQFRS
GQQRFAMTVAPLDDGFSITEPAITVLTERQLYGERVSQSRRRKRAGRDPETIIRDLGELT
IGAPIVHEDHGVGRYLGLITLDVGGEVGEFLAIEYAKGDKLYVPVANLHLVGRYTGSAPE
LAPLHTMGGEAWTKAKRRAAEKVRDAAAELLEIYAKREARGGTALTFERYLYEQFAAAFP
FEETPDQLQAIEAVIADLVSPKAMDRVVCGDVGFGKTEVALRAAFCAAIGGKQVALLVPT
TLLANQHYRNFSDRFADWPIRVEMLSRFKTKKETDAAIAKLAEGQIDIVIGTHKLLSSEI
RYKDLGLVIIDEEQRFGVRHKEQFKKLRAEVDLLTLTATPIPRTLNMSMSGLRDLSIIGT
PPAHRLAVQTFVTPWDQALLREACQRELARGGQIYFLHNEVENIEKMAATLTELVPEARI
KIAHGQMPERELEQVMLDFYRQRFNILLATTIIESGIDVPSANTIIINRADRFGLAQLHQ
LRGRVGRSHHRAYAYLVTPERKAMTADAVKRLDAIASLDELGAGFTLATHDLEIRGAGEL
LGEDQSGQIQEVGFTLYTEMLERAVKALKSGKIIDLEAPPEQRVDVELRIAALIPSDYID
DVNTRLSLYKRIASAESADALRELQTEMIDRFGLLPDKTKNLFAIAGFKLAAQRLGIKKL
DMDGKGGRILFRPKPPIDPLTIIKLIQAEPKTYALDGQDKLKVRKELPEPADRLGMAQHL
LQRLAA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaccgaaattcctgtctttgccgctgccggctgccggtcaacagcgtgcctatgtg
gcggtgcccggcgggtctggcctgagcctcgcgattgccgatacggcgcgccagcatgag
ggcttggtcttggtcgtcgtagccgattcgcatgcggcccatcaattggaagccgaactg
ggtctgtttgcgccggccgatctgccgattctgcatttcccagactgggaaacgctgccc
tacgacgtattttcgccgcatccagacatcgtgtcggcgcgtatcgaatcgctttatcgc
ctacccggactcaagcgcggcattctggtggtgccggtgcagaccctttgtcagcgcctg
ccgccgttaagctttgttcaaggcgagagccttgtcttgtctgtgcgccaacagctggac
ctggaaaccgagcgccggcgtctggatgccgcgggctaccggcacgttccaaaggtgctg
gagcctggcgattacgcaacgcgcggggcgctcctcgatatctatccgtccggatcgcgc
gaaccctatcgcatcgaactgcttgatgacgaaatcgattcgatccgaacctttgacccc
gagacccagcgctctcgcgaaaaagtgcagaacatccgcttgttgccggctcgcgagttt
ccgctcacggccgaggccacgaaggcgtttcgccttcgcttggcggatcggttcgacatc
gatttgcggcgcagccctttgtaccaggacatgcgcgaaggcgcggcacctgcgggcatc
gagtactacttgccgttgttcttcgaacagatggcgacgctgttcgattacttaggtgtc
acgccgctgatcgtctgtgcccacaatgtgctccaggcggccgacgacaatgcgcggcag
accgaagcgcgttatcagagtcggcggcacgacatcgagcggccggtgctggctcccgcc
gaactctttctgagcccggaacaattgcggtcggcgttgaacaaacatcgccggatcgag
ttgcagccgcctgaaagcacgggtgagctcattcgcatgccgctttcaacggcgcccatg
ctgcccattcagcgcaaacacgaagacccggcgcaagacctgaaactgtttctccgcgct
taccccgggcgcgtgctgatcgcggccgattcggccgggcgacgcgaagcgttattggat
ttgctcgccagttttggcatcaaacccgaggtgtgcggcgactggcaacagttccgctca
ggtcagcaacgctttgcgatgacggtcgccccgctggatgatggcttcagcattaccgag
ccggccatcacggtgctcaccgaacgacagctctacggcgagcgtgtcagccagagccgt
cgtcgcaagcgtgccggacgggacccggagaccatcatccgggatctcggcgaactcacc
atcggcgcgccgatcgtccatgaggaccatggtgtcggtcgttacctcggcttgatcaca
cttgatgtgggcggcgaggttggcgagttcttggcgattgagtacgccaagggcgacaag
ctttatgtgccagtcgcgaatctgcatctggtcggtcgctatacgggctcggcaccggag
ctcgccccgctgcacacgatgggcggcgaggcgtggaccaaggctaagcgacgtgccgcc
gagaaggttcgcgacgccgccgccgaattactcgaaatctacgcgaagcgcgaggcccgt
ggtgggaccgcgctcaccttcgaacgctatctctacgaacaatttgccgcggcctttcca
tttgaggaaacgccggatcaattgcaggccatcgaggccgtcattgccgatctcgtgagc
cccaaggccatggatcgcgtggtgtgcggcgatgtggggtttggcaagaccgaagtcgcg
ctgcgcgccgcattctgcgccgccattggcgggaagcaggtggcgctcctggtgcctacg
accctgctcgcgaatcagcactatcgcaacttctccgatcgtttcgctgactggccgatt
cgggtggaaatgttgtctcgcttcaagaccaagaaggaaacggacgcggccatcgcaaaa
cttgccgaaggtcagatcgacatcgtgatcggcacccacaaactcttgtcatcggaaatc
cgttacaaggacttggggctggtgatcatcgatgaagaacagcgctttggcgtgcgccac
aaggagcagttcaagaaactgcgtgccgaagtcgacctattgactctgactgctacaccg
atcccaaggaccttgaacatgtcgatgagcggtctgcgcgatctgtcgatcatcggcacg
ccgcctgcgcaccgactggcggtacagacgttcgtcacgccttgggatcaagccctgttg
cgtgaagcgtgccagcgcgaactcgcgcgtggcgggcagatttatttcctgcataacgaa
gtcgagaacatcgaaaagatggccgcgacactcaccgagctggtgccggaggcccggatc
aaaatcgcgcatgggcaaatgccggaacgtgagctggaacaagtgatgctcgacttctac
cggcagcgcttcaatattctgctggccaccacaattatcgaatccggtattgacgtaccc
agtgcgaatacgatcatcatcaatcgcgccgatcgctttggcctggcgcagttgcaccag
cttcgcggtcgcgtgggtcgctctcatcatcgtgcatacgcctacctggtgacgccagaa
cgcaaggccatgacggcggatgcggtcaagcggctcgacgcgattgcttcgctggatgag
ctgggcgctggcttcacgctggcgacgcacgacctcgaaatccgcggtgccggtgagttg
ctgggtgaggatcaatcggggcagatccaggaagtcggctttacgctctacaccgaaatg
ctggagcgcgcggtcaaggcgctcaagtctggcaagatcattgatctggaagcaccgccc
gagcagcgagtggatgtggaactgcgcattgcagcgttgattccgagcgactatatcgat
gatgtgaacacgcgcctgtcgctatacaagcgcatcgcatcggccgaatcagccgacgcg
ttacgcgagttgcagaccgagatgattgatcgctttggcctgttgcccgacaagacgaag
aatctgtttgcgattgccgggttcaagcttgcggcccagcggcttggaatcaagaaactg
gatatggatggtaagggcggtcgaattctgttccggcccaagccgccgatcgatccgctc
acaatcatcaaacttatccaagccgagcccaaaacctacgcgctggatgggcaggacaaa
ctcaaggttcggaaagagttgccggagccagccgaccgtctcggcatggcgcagcacctg
ttgcagcgcctcgccgcatga
DBGET
integrated database retrieval system
