Xenorhabdus budapestensis: HGO23_01505
Help
Entry
HGO23_01505 CDS
T07176
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xbu
Xenorhabdus budapestensis
Pathway
xbu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xbu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HGO23_01505 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbu03021
]
HGO23_01505 (rpoB)
03400 DNA repair and recombination proteins [BR:
xbu03400
]
HGO23_01505 (rpoB)
Enzymes [BR:
xbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HGO23_01505 (rpoB)
Transcription machinery [BR:
xbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HGO23_01505 (rpoB)
DNA repair and recombination proteins [BR:
xbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HGO23_01505 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QTL40131
LinkDB
All DBs
Position
361080..365108
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQ
SYSGSSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRAMDYTTENILNLFFDKTIFEIRDNKLQMT
LVPERLRGETASFDIEANGKLYVEKGRRITARHIRQLEKDQVDRIEVPVEYIAGKVVARD
YIDQNTGEIICTANMELSLDLLARLSQSGHKTIETLFTNDLDHGAYISETLRIDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLDREEVEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNYVIAQANSALDEEGHFIEELVTCRHYDESSLFNRDQVQYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGVVQYVDASRIVIKVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEHVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLRQAKKDL
TEELQIFEAGLFARIRNVLISGGIEAEKLDKLPRERWLELGLADEDKQNQLEQLAEQYDE
LKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYDLGDDTRQKVDLNTFTDDEVMRLAENLKNGMPIATPVFDGAKETEIKELLK
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggatgttccataccttctttctatccaacttgactcgttccagaagtttatcgag
caagatcctgaaggccagaatggactggaagcggccttccgttctgtgttcccaattcag
agttacagcggcagttctgagctgcaatatgtaagctaccgtcttggcgaacctgttttt
gatgttcaagaatgtcagatccgtggcgtgacttattccgctccactgcgtgttaaactg
cgtctggtgatctatgagcgtgaagcgccagaaggcacagttaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgataacgggactttcgttatcaacggt
actgagcgtgtaatcgtatctcagttgcatcgtagcccaggcgttttctttgacagcgat
aagggtaaaacccattcatccggtaaggtactatataatgcacgtatcattccttaccgt
ggttcatggctggatttcgaattcgatcctaaagataacctgtttgtgcgtatcgaccgt
cgtcgtaaattaccggcttcgattattctgcgcgcgatggattataccactgagaacatt
ctgaacctgttcttcgataaaactattttcgaaatccgcgacaataaattgcagatgact
ctggttccagaacgtctgcgtggcgaaacagcttcattcgatattgaagcaaacggcaaa
ctttatgttgaaaaaggccgtcgtatcactgctcgccatatccgtcagttagaaaaagat
caggtagaccgtattgaggtgcctgtcgaatatattgcgggtaaagttgttgcaagagat
tacatcgatcagaacacaggtgaaatcatctgtactgctaacatggaactctctttggat
ctgctggcgcgtttgagccaatctggtcataaaaccattgagaccctgttcaccaatgac
ttggaccacggggcatacatttccgaaactctgcgtattgacccaaccaacgatcgtttg
agcgcattggttgaaatttaccgcatgatgcgtccgggcgaaccaccaacccgcgaagct
gcagaaaacttatttgagaacctgttcttctctgaagatcgttatgatctgtctgcagtt
ggccgtatgaagttcaaccgctccttggatcgtgaagaggttgaaggttccggtatcctg
agcaaagatgacatcattgatgtcatgaagaagcttattgatatccgtaacggtaaaggc
gaagtggatgatattgaccacttgggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgttggtctggtacgtgtagaacgtgcggtgaaagagcgtttgtct
ctgggtgatttggataccctaatgccacaggacatgatcaacgccaagccaatttctgcg
gcagtgaaagagttctttggctccagtcagttgtctcaatttatggaccagaacaatcca
ctgtctgaaatcacccataaacgtcgtatttctgctttgggtccgggtggtctgacccgt
gaacgcgcaggctttgaagttcgagacgtacacccgactcactatggtcgtgtatgtcca
attgaaacgcctgaaggtccaaacattggtctgattaactcactgtctgtttatgcacgt
actaacgagtatggtttccttgaaaccccttatcgtttagtacgcgacggtgtagtaaca
gatgagattcattacctgtcagcgattgaggaaggtaactacgtcattgcgcaggctaac
tccgcattggacgaagaaggccactttatcgaagaactggtaacttgccgtcactatgac
gaatccagtttgtttaaccgtgatcaggttcagtacatggacgtttcgacacaacagatc
gtgtccgtcggtgcttccttgatcccattccttgaacacgatgacgccaaccgtgcattg
atgggtgcaaacatgcaacgtcaggcggttccaactctgcgtgcagataagccgctggtt
ggaacaggtatggagcgtgcggtagcggttgactctggtgtaacctccgttgctaaacgt
ggtggtgtggttcagtacgttgacgcatcccgtatcgtgattaaggttaacgaagatgaa
atgtacgcgggtgaagcgggtattgatatctataacctgactaaatacacccgttctaac
caaaatacttgtatcaaccagatgccatgtgtatctctgggtgaacacgtagaacgtggt
gacgttctggctgatggtccatccactgacttgggtgaactggcgctgggtcagaacatg
cgcgtggcgttcatgccatggaatggttataacttcgaggactccatcctcgtttcggaa
cgtgtagttcaggaagaccgtttcactactattcatattcaagaactggcttgtgtatcc
cgtgataccaaactggggcctgaagagatcaccgctgacatccctaacgtgggtgaagca
gcgctgtctaagctggacgaatccggtatcgtttatatcggtgcggaagtgaaaggtggc
gacattctggtgggtaaagtaacaccgaaaggtgaaacgcagttaacgccagaagaaaaa
ctgttgcgtgcgatctttggtgaaaaagcatctgacgttaaagactcatcactgcgcgta
ccgaacggtgtttccggtactgttatcgacgtacaggtctttacccgtgatggtgtagaa
aaagacaagcgtgcgctggaaatcgaagagatgcagttgcgtcaggcgaaaaaagacttg
actgaagaactgcaaattttcgaagccggactgtttgcccgtattcgcaatgtactgatt
tccggtggcattgaagcggagaaattagacaaactgccacgtgagcgctggttagaactg
ggtctggctgatgaagataaacaaaatcagcttgagcagttggcagaacagtatgacgaa
ctgaaagctgagttcgagaagaagctggatgctaaacgccgtaagatcactcagggtgat
gacttggcaccgggcgtactgaaaattgtcaaagtttatctggcagtgaaacgtcagatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatctctaagattaac
ccgatcgaagacatgccttacgatgaaaacggtactccggttgacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaacccacttgggtatggcg
gcgaaaggtattggtgacaagatcaatgcgatgctgaaacagcagcaggaagttgccaaa
ctgcgtgaattcatccagaaagcttatgatctgggtgatgacacccgtcagaaagttgat
ttgaatactttcactgacgacgaagtcatgcgtctggctgaaaacctgaaaaacggtatg
ccaatcgcaactccagtctttgacggtgcgaaagagactgaaatcaaagagctgttgaaa
ttgggtggtttaccgacctccggtcagatcacactgtttgatggccgtactggtgagcaa
tttgagcgtcaggtaactgttggttacatgtacatgctgaaattgaaccacttggttgat
gacaagatgcatgctcgttctaccggttcttacagtctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgtttcggtgagatggaagtgtgggcactggaagca
tacggtgcagcatatactctgcaagaaatgcttaccgttaaatctgatgatgttaacggt
cgtaccaagatgtataaaaacatcgtggatggtaaccaccagatggaaccaggtatgccg
gaatctttcaacgtattgctgaaagagatccgttccttgggtatcaatatcgagctggaa
gacgaataa
DBGET
integrated database retrieval system
