Xanthomonas citri pv. citri NT17: J169_03155
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Entry
J169_03155 CDS
T03734
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
xcn
Xanthomonas citri pv. citri NT17
Pathway
xcn02020
Two-component system
xcn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xcn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
J169_03155
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J169_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcn03021
]
J169_03155
Transcription machinery [BR:
xcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J169_03155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_Crp_2
HTH_IclR
HTH_AsnC-type
HTH_23
Sigma70_r4
Sigma70_r4_2
HTH_11
HTH_Tnp_ISL3
MarR
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AJY91950
LinkDB
All DBs
Position
3474277..3475674
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AA seq
465 aa
AA seq
DB search
MTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDIAVESAPSASTEEPQ
REEVAPAERDDDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPL
SPRDRQIGAMLIDALDEDGYLREPLSAILETLALGAAVDEADVLTVLHQIQRFDPVGVGA
RTLGECLALQLGVLDADTPGRELALQIVAGPLERLPRAGVAGLAHELKRSTADVEQAVQL
VRSLDPRPGKQIGDLSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYENLIRSCG
ESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLEHQAGFLEFGAQALRPLTLREIAG
ELGLHESTISRAIARKYVRTPRGTIALRAFFASGIDTDSGGEASSTAIQAMIRRLIDAEN
PRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcagttgcgtcaggcgatcaagctattgcagatgtccaccaccgagctggaa
gtggaaatcgccgaggccgtggaaaccaatccgctgctggaatgggccgacgaagccgcg
catgccgccagcgacatcgcggtggaatccgccccgtccgcgtccaccgaagaaccccag
cgcgaagaagtcgcgcctgccgagcgcgacgacgattggtcgcaggacgagctgcagtgg
accggctcgggcagcggcggcagcttcgacgacgacgagtccggcgatgccgcagagcgc
gtggccgaatccgaaacattggccgaccacctcttgtggcagttgcatctgtcgccgctg
tcgccgcgcgaccgccagatcggcgcgatgctgatcgacgccctcgacgaagacggctac
ctgcgcgaaccactgtcggccattctcgaaaccctcgcgctgggcgcagcggtcgacgag
gccgacgtgctcaccgtcctgcatcagatccagcgcttcgacccggtgggcgtgggcgcg
cgcacgctgggcgaatgcctggcactgcagctgggggtgctcgatgcggacacgcctggc
cgcgagctggcgctgcagatcgttgccggcccgctggaacggctgccgcgcgccggcgtg
gccgggctggcgcacgagctcaagcgctccactgccgatgtcgaacaggcggtgcagctg
gtgcgctcgctggacccgcgcccgggtaaacagatcggcgacctgtcgcaggacacctac
gttgttcccgactgcgtgatctggcgccagcgcggggtctggcgggctgcgctggccggc
cgcgcgcagcccaaggtcaccattcaccgcggctacgaaaacctgatccgcagctgcggc
gaatccgatgccggctatctgcgcggccagttgcaggaggcgcgctggctgctcaagagc
ctggaggcgcgtggcgaaaccctgctgcgggtggtgcgctgcctgctggaacatcaggcc
gggttcctggagttcggtgcgcaggccttgcgcccgttgacgctgcgcgagatcgcaggc
gagctcggcctgcacgagtccaccatttcccgcgcaatcgcccgcaagtacgtgcgcacc
ccgcgcggcaccattgcgctgcgcgcgttcttcgcctccggcatcgacaccgacagcggc
ggcgaggcctccagcactgccatccaggccatgatccggcgcctgatcgatgcggaaaac
ccgcgcaagccgctttccgacgccaagctggccgatctgctgaaaacatccggcgtccca
gtggcgcggcgcaccgttgcgaagtatcgtgaggccatgaacatttccgcctcccacgaa
cgcgtgcgcatcgcctga
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