Xiphophorus couchianus (Monterrey platyfish): 114135534
Help
Entry
114135534 CDS
T05908
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114135534
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114135534
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114135534
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114135534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
114135534
NCBI-ProteinID:
XP_027858696
LinkDB
All DBs
Position
20:complement(11155254..11205904)
Genome browser
AA seq
1491 aa
AA seq
DB search
MLSFMDSRTVLLLVASQVCLLAVVRCQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGTGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQS
GPMGPRGPSGPPGKPGDDGEPGKPGKSGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GTKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPP
GPVGTAGAPGFPGSPGSKGEAGPTGARGPEGAQGSRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPA
GPQGALGPQGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGPP
GASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGALGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGDS
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNPKPAKIPRKNWWSSKSKERKHVWFGETMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYLDASTSNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGQWGKTMFEYRSQKTSRLPIVDIAPMDIGGADQEFGIDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttgtagcatcccaagtttgtcta
ttagccgttgtgagatgtcaactggaagatgaccaggaggatgcttctgcctgtagacac
gaaggacaactttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccaccacct
tttggaggaacaggagccaagggtcagaagggtgaacccggagacattacagatgttgta
ggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgaggacca
agaggagacaaaggagagaaagggagccctggtcctcgtggcagagatggtgaacctgga
acccctggaaaccctggaccccctgggcctccaggacctaatggaccccctggacttggt
ggaaactttgctgctcagatggccggtggttttgatgagaaggccggaggtgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctcagga
tcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggacaatct
ggccccatgggtccccgtggcccctccggtccccctggaaaacccggagatgatggtgaa
ccaggtaaaccaggaaaatcaggtgaccgtggacccaccggacctcagggagctcgtggt
ttcccaggaactcctggactgccaggcatcaagggacacagaggttatccaggtctcgat
ggtacaaagggagaaactggtgctgttggtgcgaagggtgaggctggtgctcccggggag
agcggcgctcctggacccatgggaccacgtggtttgcctggggagagaggacgacccgga
tccactggagctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcctcca
ggccctgttggtacagctggagctccaggcttccccggatctcctggttcaaagggtgaa
gctggtcctactggcgcccgtggtcctgaaggagctcaaggatcccgtggagagtcaggc
actcctgggtcatctggaccctctggtgcttctggtaaccctggcactgacggtatccct
ggagctaaaggctcagcaggtgctccaggtatcgcaggtgctcctggcttccctggacct
cgcgggcctcctggacctcagggagcaactggaccccttgggccaaaaggaacatctgga
gatcccggtatcgccggattcaagggtgaagctggaccaaagggagaaattggaccagct
ggacctcagggagcccttggccctcaaggagaagaaggcaagagaggacccagaggtgag
cctggttctgctggacctcttggacctccaggagaaagaggagctcctggtaaccgtggt
ttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgcggaccccct
ggggccagcggtgccaagggagccacaggcgaccctggccgtcctggagagcctggtctt
cctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagttggg
ccttctggagctccaggtgaggacggacgtccaggacctcccggccctcagggagccaga
ggacagcctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggcaaa
tctggtgagaaaggactggccggagctcctggtctgagaggtctgcctggaaaagatgga
gagacgggcgcggctggaccccctggccctgctggccctgctggggagagaggagagcaa
ggacagcctggtccctctggtttccagggtcttccaggacctcctggccctcccggtgag
ggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccactgga
cccagaggagagcgtggttttccaggagagagaggagctgctggaccgcaaggtttgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagccattgggcct
gctggaggtccaggagctcagggtccaccaggtctgcagggtatgccaggagagagagga
gctgctggcattcctggacccaaaggagacagaggtgatgttggagagaaaggacctgaa
ggtgctcccggcaaagatggcgccagaggtcttactggtccaattggtcctcctggtcct
ggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggacctgctggt
gttcgtggtgcacctggagacagaggagagactggacctcctgggcctgctgggtttgct
ggacctcctggagccgatggtcagcctggaaccaaaggagagcagggagaagctggacag
aagggagatgctggagcccctggaccccaaggaccatccggtgcccctggccctgcgggt
cctacaggtgtttctggacctaaaggtgctcgtggtgcccagggtcctcctggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctggacct
gcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggtgga
cctcctggcagacaaggcgacgctggactacgcggtcctgcaggagctccaggagagaag
ggcgaccctggagaggacggtcctcctggtccactaggtccctcaggtcctcagggattg
gctggtcagcgcggtattgttggtctacccgggcagagaggagaaagaggtttccctggt
ttgcctggaccttctggtgagcctggaaagcagggagctgctggtggtcctggagaccgt
ggaccacctggaccagtcggaccgcctgggctcactggtcctgctggagaacctggtaga
gagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaagggt
gaccgtggcaacaccggtcctgctggtgctcctggtgctccaggtgctcttggggctccc
ggcccagtcggtcccaccggaaaacagggagacagaggggagtctggtgcccaaggacca
gctggacctccaggaccggccggtgccagaggaatgcctggaccccaaggaccccgtggt
gataagggtgaagctggagagtctggtgagagaggacagaaggggcacagaggtttcact
ggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactggacct
gctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaagacggg
tcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgtactggagactct
ggtcccgctggtcctcctggaaaccctggaccccctggtcctcctggtccccccggtcct
ggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgatcccctg
aggtatatgagggcagaccaggccgctgggaatcttcgtcaacatgacgcagaggtcgat
gccactcttaagtccctcaacaaccagattgagaacatccgcagcccagagggatccaag
aagaaccctgcccgcacctgcagagacctgaagctctgccatcccgactggaagagcggt
gagtactggattgatcccaatcaaggctgcactgtagatgcaatcaaagttttctgcaac
atggaaaccggggagtcttgtgtgaaccccaaacctgccaagatccctcgcaagaactgg
tggtccagcaagagcaaagaacgcaaacatgtctggttcggagagacaatgaacggagga
ttccatttcagttatggtgacgacagcctggcacccaacaccgcctccattcagatgact
ttcctgaggttgctgtcaacagaggcttcccaaaatctcacttaccactgtaagaacagc
gtggcctacttggatgcttcaacaagcaacctgaagaaggccgtcctgctgcaaggctcc
aacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaagac
ggctgcacgagacacacaggacagtggggtaagacaatgttcgaatacaggtcgcagaag
acctcccgtctgcccattgtggacattgcccccatggatatcggtggagcagaccaggag
tttggaattgatattgggccagtttgcttcttgtaa
DBGET
integrated database retrieval system
