Xiphophorus couchianus (Monterrey platyfish): 114142035
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Entry
114142035 CDS
T05908
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xco03016
]
114142035 (cdkal1)
Enzymes [BR:
xco01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
114142035 (cdkal1)
Transfer RNA biogenesis [BR:
xco03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
114142035 (cdkal1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
Glyco_hydro_120_ins
Motif
Other DBs
NCBI-GeneID:
114142035
NCBI-ProteinID:
XP_027868856
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Position
3:20966720..21157262
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AA seq
564 aa
AA seq
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MPSACDSLIEDIEDMVSFNDPTPHDRQSARKSILPRSRRKKELLSNEELQVDSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYKITEDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVQEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFRRVVDFLKDKVPGVTIATDIICG
FPGETEEDFQDTLELVKHYQFPSLFINQFYPRPGTPAAKTEQVPAHVKKQRTKKLSELFH
SYNPYDHKVGERQFVLVTEESFDAQYYVSHNKFYEQVLVPKRADFKGKMIEVDIYEAGKH
FMKGRPVEDSKPFTPSIGVPLRKGEVSGLLQEHMANGVKGSASVPPDSALLVGSYSLDRE
LLKKLGICIALAAAVLAFVIEKVY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccatccgcctgcgactctctgattgaagacattgaggatatggtgtcttttaatgac
cccactcctcatgacagacagtctgcaagaaagagtattctgccaaggtcaagaaggaag
aaagagcttttaagcaatgaagagcttcaagtagacagtttgatccctggcacccaaaag
atctggatgaaaacgtggggatgcagccataacaactcagatggggagtacatggctgga
cagctcgctgccagcggatacaagataacagaggacccagcagaagcagacttgtggttg
ctgaacagctgcacagtgaaaaatcctgcagaggaccacttcagaaattcaatcaagaaa
gcccaggagcagcagaagaaagtggtcgttgcaggttgtgttcctcaggctcagccccgg
atggactaccttaaaggtcttagcattattggggtccaacagattgatcgagtggtggaa
gtagtggacgaggctgttaaaggtcactctgttcgcttgctgggtcagaagaaagatggt
ggaaggagacttggaggtgcgagattggacttgccgaagattagaaagaaccctctgatt
gaaatcatctccattaacactgggtgtttgaatgcatgtacgtactgcaagacaaaacat
gctcgaggagacttggccagctatcccatagaggagcttgtggaacgagctaggcagtct
ttccaggagggagtgtgtgagatctggttgacaagtgaagacactggtgcttacggcaga
gacatagggacagacctgcctacattactgtggagattagtgcaggagatacctgaagga
gccatgctgaggctgggcatgaccaaccctccttacatcctggaacacctggaggagatg
gcaaagattttaaatcacccacgtgtttatgccttccttcatgttcccgtgcagtcggcc
tcagacagtgtcctgatggacatgaagagggaatattgcattgatgacttcagaagagtt
gtggacttcctcaaagacaaagtacctggagtaacaattgctacagatataatctgtgga
tttcccggtgagactgaagaagacttccaggacactttagaacttgtgaaacactatcag
tttcctagtttattcatcaaccagttttaccccagacccggtacacctgctgctaagacg
gagcaagttccagcacatgtgaaaaagcaacggactaaaaaactctctgaactcttccac
tcttacaacccctacgaccacaaggtaggagagaggcaatttgtgctggtgacagaggag
tcatttgatgcccagtactatgtttcccacaacaagttctacgaacaggtgctggtaccg
aaaagggctgatttcaaaggaaagatgattgaagtggacatctacgaggcagggaagcac
tttatgaaggggcgaccagtagaagacagcaagcctttcactccctctattggagtgcct
cttcggaaaggagaagtctctggtttgttgcaggaacatatggccaatggagtcaaagga
tctgcttctgtgccacctgactctgcgctcctggtcggctcctacagtctggacagagaa
ctgctgaagaaactggggatttgcattgcactagcagccgccgtcttggcctttgttatt
gagaaggtctactaa
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