Xanthomonas campestris pv. vesicatoria: XCV3733
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Entry
XCV3733 CDS
T00288
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xcv
Xanthomonas campestris pv. vesicatoria
Pathway
xcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCV3733 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcv03019
]
XCV3733 (rhlE)
Enzymes [BR:
xcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCV3733 (rhlE)
Messenger RNA biogenesis [BR:
xcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCV3733 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
CAJ25464
UniProt:
Q3BP49
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All DBs
Position
4314998..4316386
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AA seq
462 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGERAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSGGPRQANAGAGAGRRDGGRGGNGRPANRGA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgctg
cagcaccttggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatt
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggcttcctgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagacgctgctgttctcggccaccttcgaagagaacatcaagcagttggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcactcaccgcgtgcacccggtcgacggcgcccgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgttcgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccatggcaacaag
agccagggtcagcgcatgcgcgcgctgagcgacttcaaggcaggccgggtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggcaacagcgcgccgggtcgcgccgagcagccgggtggcgagcgc
gcgccgcgcaagagccacgcccgtcgtccacatggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggtggccagcgcagcggcgggccgcgtcaggccaacgct
ggcgcgggcgcaggccgtcgcgatggtggacgtggcggcaatggccgtccggccaaccgc
ggcgcctga
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