Xanthomonas dyei: NYR95_00705
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Entry
NYR95_00705 CDS
T09460
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NYR95_00705 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdy03400
]
NYR95_00705 (ligD)
Enzymes [BR:
xdy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NYR95_00705 (ligD)
DNA repair and recombination proteins [BR:
xdy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NYR95_00705 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
SPOR
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WOB54201
LinkDB
All DBs
Position
173517..175568
Genome browser
AA seq
683 aa
AA seq
DB search
MGRHDHATKRRPMQATWRTRALKLDGARDARCPTDVRAQLTLLREQAPDGDGWLHEIKWD
GYRLLADLVDGRVQLRSRNDQAWTDRFPQVVSALQALPVRDARLDGSARQPLRYLVFDLL
GVAGVDLRDTPLLQRKQLLRALLGNTPGTLAYSDHVIGHGPEVFAASADKGWEGIVSKRS
DAAYRGGRGADWVKTKHEDSDEFVVVGYTDPKGARSGFGALLLAQPDGKALRYVGRVGTG
FDDALLDKITTQLRALHSDTATLELPSHLPGRPRDVHWVRPALIAEVAFRGWAKQGLLRQ
AAFKRLRQDKPMIDLGGDRAAPTKRATKTRAAAAKSSVATRETASKKVSTTTSSVASTRT
RAGEAASKSRTSVASSVTTTASATSKKTAAALSTDGVTITHPERVVFPALGISKGEVADY
YRAVAPLVLPEVARRPLSLLRCPDGVGGDCFFQKHQGRQLGAHIEAIALKQKSGTEDYLY
IEDAAGLLELVQMNTLELHPWGACVDDPEHPDRLVFDLDPGEQVAWSAVVAAARDIRTKL
RAAGLESAVRLSGGKGLHVVVPVVPDVSWEQARDFCEAFAQALATQAPARYVATMSKAKR
HGVIFVDWLRNGRGNTSVCSWSLRARDKATVAVPLHWEELGKISGPDAFPIDKAVQRAKR
QRVDPWAEVLAVKQRLPTGEGKR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgggccggcacgaccacgccaccaagcgcaggcccatgcaggctacctggcgtacgcgt
gcactgaagttggatggcgcacgcgatgcgcggtgtccgaccgacgtgcgtgcgcagctc
acgctgttgcgcgagcaggccccagacggcgatggatggctgcatgaaatcaaatgggat
gggtatcgcctgctggccgatctggtcgatggccgtgtgcaactgcgctcgcgtaacgac
caggcatggaccgaccgcttcccgcaggtagtgagcgcgctgcaggcgttgccggtgcgc
gacgcgcggctggatggcagcgcgcggcaacccctgcgctatctcgtgttcgatctgctc
ggtgtggccggcgtcgatctacgcgatacgccgctgctgcagcgcaaacagctgctacgc
gcattgctaggcaacacaccgggcacgttggcttacagcgaccatgtgatcgggcacggg
ccggaggtgttcgcggccagtgccgacaagggctgggaaggcatcgtcagcaagcgtagc
gatgcggcgtatcgcggcggccgcggtgcggattgggtcaagaccaagcacgaagacagc
gacgagtttgtggtggtgggatacacagatcccaagggcgcgcgcagtggcttcggtgcg
ttgctgcttgcacaaccggacggcaaggcgctgcgttacgtgggccgcgtgggcaccggt
ttcgatgacgcattgctggacaagatcaccacgcaactgcgtgcgttgcatagcgacacc
gccacgttggaactgccatcgcatctgcctggccgtccgcgcgacgtgcactgggtgcgg
ccggcgctgatcgccgaagtggcattccgtggctgggccaagcaagggttgttgcggcag
gctgcgttcaagcggctacggcaggacaaaccgatgatcgatctgggtggcgaccgcgct
gcacccaccaagcgcgcgaccaagacacgcgctgcagcagcgaaatcgagcgtggcgacg
cgggagaccgcgagcaaaaaagtctccacgaccacgagcagcgttgcgagcacacgcaca
cgcgctggcgaggcggcgtccaagagcaggacatccgtggcatcgagcgtcaccaccact
gcatcggccacgtcgaagaagacagcggcggcgctgtccaccgacggcgtcaccatcacc
catcccgagcgcgtggtgtttcctgcgctgggcatcagcaagggcgaggtggcggactac
taccgcgccgtggcgccgctggtgttgccggaggttgcgcgccggccgctgtccttgctg
cgctgccccgatggcgtgggcggcgactgtttcttccagaagcaccagggccggcaactg
ggcgcgcatatcgaggcgattgcgctcaagcagaaaagcggcactgaggattatttgtat
atcgaggatgcggccggcttgctcgagctggtgcagatgaacacgctggagctgcatccg
tggggggcgtgcgtcgacgacccggagcatccggaccgcctggtattcgacctggatccg
ggcgaacaggtcgcctggtccgccgtggtggccgccgcgcgcgacatccgcaccaagctg
cgcgcggcgggactggaaagcgcagtgcgcttatccggcggcaaggggctgcatgtcgtc
gtgccggtcgtgcccgatgtcagctgggagcaggcgcgcgatttctgcgaggcattcgcg
caggcgctggccacgcaggcgcctgcgcgttacgtggccaccatgagcaaggccaagcgc
catggcgtgatctttgtcgactggctacgcaacggccgcggcaacaccagcgtgtgttcg
tggtcgctgcgcgcgcgcgacaaggccaccgtcgcggtaccgctgcactgggaagagctc
ggcaagatcagcgggccggatgcatttccgatcgacaaggccgtgcaacgtgccaagcgc
cagcgtgtggacccgtgggcggaggtgctggcagtgaagcaacggttgccgacaggcgag
ggcaagcgctaa
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