Xanthomonas citri pv. fuscans: XFF4834R_chr34570
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Entry
XFF4834R_chr34570 CDS
T03094
Name
(GenBank) putative pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu00040
Pentose and glucuronate interconversions
xfu01100
Metabolic pathways
xfu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XFF4834R_chr34570
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XFF4834R_chr34570
Enzymes [BR:
xfu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XFF4834R_chr34570
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Lectin_like
Motif
Other DBs
NCBI-ProteinID:
CDF62889
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Position
complement(4011431..4012564)
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AA seq
377 aa
AA seq
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MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKN
AAELKAALSASVGSNGRIIKVSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNA
EIREGYFYVKANDVIIRNITIENPWDLEPVWDPDDGSAGNWNAEYDGLTVEGASNVWVDH
VTFTDGRRTDDQNGTANGRPKQHHDSAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSHAHGVGKESK
IFSERNVFEIGGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTSIGWTPPYTYNLLS
ADKVAADVKAKAGAGKL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgaaattttcgacggcggccgccgcgtcgctgttcgttgggtcgttgctgctc
accggcgttgcctatgccgatgcggcgttggaggttgcaaccacgggctgggcgacccag
aacggcggcaccaagggcggctccaaagcggctgccgccaatatctacaccgtcaagaac
gccgccgaattgaaagcagcattgagcgcaagcgtcggaagcaacgggcgcatcatcaag
gtcagcggcatcatcgacatcagcgaaggaaagccttacaccaaaacctcggacatgaag
acgcgcgcgcgtctggacgtgcccaccaagaccacgctgatcggcatcaccagcaacgcg
gaaattcgcgaaggctatttttacgtcaaggccaacgacgtcatcatccgcaatatcacc
atcgaaaatccatgggacttggaaccggtctgggacccggatgatggcagtgccggcaac
tggaatgcggagtacgacggcctgaccgtggaaggcgccagcaacgtgtgggtggaccat
gtcaccttcaccgatggccgccgtaccgacgatcagaacggcaccgcaaatggccgtccg
aaacagcaccacgatagcgcgatggacatcaagaaaggcgccaatttcgtcaccgtctcg
tactcggccttcaagtcgcacgagaagaacaacctgatcggctccagcgacagcgcgtcc
agtaccgacagcggcaagctcaaggtcaccattcacaacaccctgttcgaaaacatttct
gcgcgcgccccgcgcgtgcgcttcggtcaggtccatctgtacaacaactaccacgtcggc
agcaccagtaatgcggtgtatccgttctcccacgcgcatggcgtgggcaaggagtcgaag
atcttctccgagcgcaacgtgttcgagatcggcggtgtcagcagctgcgacaagatcgcc
gccgactacggtggcagcgtgtatcgcgatcagggttcgctgctcaacggcaaggcgctg
tcgtgctcgtggaataccagcatcggctggacaccgccctatacctacaatctgctatcg
gcagacaaggtcgctgcagacgtcaaggcgaaagcaggcgccggcaagctgtaa
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