Xiphias gladius (swordfish): 120796140
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Entry
120796140 CDS
T07311
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120796140 (col13a1)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120796140 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120796140
NCBI-ProteinID:
XP_039994488
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Position
LG11:complement(26375867..26527313)
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AA seq
713 aa
AA seq
DB search
MSNMEQDRKWGVTENPAEQWRSRGEQQQPSNQPLWRNWRDLSGVTICIAVSVLCLGVCIV
VFVRTSELQSRIVSLEQQQQRDAQLSAWRLSPEQVEPIILGRLDQILEEKLAVRLPKTRE
VREAPHSCLCPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGKAGEKGAPGEPGLSIIGPRG
PPGQPGTRGFPGFPGPIGLDGKPGHNGLKGDMGQRGPKGQQGEPGAKGEKGVCGDYTHRG
LFVQDLPLKTLAALRSSQALMLKQGEPGVQGPPGPPGPPGPPGTPGLNGASGSPGKPGEP
GKPGKDPRLLPGLKGEPGVPGQKGDQGDVGPPGPEGTKGVKGDQGIKGDEGKWGFPGGRG
EKGEPGFPGTPGLKGQAGIPGTPGIPGKRGYRGEKGEPSIAAQGIKGEPGSPGLPGLMGH
KGEKGDRGEEGEAGPEGPAGPRGPPGPTGEPGKAEIHNNENDIRNIPLMGPPGLPGPPGP
PGLPGAKGEVGLPGPPGLDGEKGPRGKPGEPGPAGPAGPEGPRGEGGVMGFPGPKGDMGP
SGLPGPKGEPGEGATSEMIYGPPGPPGPPGPVGPAGSQGLSGPKGEPGIGIRGEKGATGQ
KGDKGDRGHLGLPGLIGPAGVPGPAGPKGERGEKGDAGLPGPTGPQGIPGLVGPQGLKGN
RGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacatggaacaggatcggaagtggggagtcactgaaaacccggctgagcagtgg
aggagtcgcggcgagcagcagcaaccttcaaatcagcctctgtggagaaattggagagat
ttgtctggcgtaacgatttgcatcgcagtgtccgtcctgtgccttggagtgtgcattgta
gtttttgtgcggacctcggagttgcagtccaggatagtaagtctggagcagcagcagcag
cgggacgcgcagctctccgcgtggaggttgtctccggagcaggtggagcccattatcttg
ggccggctggaccagatcctggaggagaagcttgcagtgcgactacccaagacacgggag
gtaagggaagctccccacagctgcctatgtcccccaggacctccaggtcctcctggacga
gcaggctttccgggtgacaaaggaagtatgggaattcctgggagaatgggcttaaaagga
aaagcaggggagaagggagcaccaggtgaaccaggtctgtctatcattggcccaagagga
cctcctggacaaccaggaacaagaggatttccaggctttccaggtccaatagggttggat
ggcaagcctggacacaatggactgaagggagacatgggtcagcgtggtcctaaaggacag
caaggggaacctggagccaagggggagaagggcgtatgtggagactacacacacaggggc
ctctttgttcaggatcttccattgaaaaccctggctgccttgcgctccagtcaggctctg
atgttgaagcagggtgagcctggcgtgcagggacccccaggacctccaggacccccaggg
cccccaggaaccccaggcttgaatggagccagtggctcaccgggtaagcctggtgagccg
ggcaagccaggaaaagacccaaggcttttaccaggactgaagggtgagccaggtgtgcca
ggacaaaagggtgatcaaggcgatgtaggcccaccaggtcctgaaggcacaaagggagtt
aaaggtgaccaaggaattaagggagacgaaggaaagtggggattcccaggagggagggga
gagaagggagaaccaggtttccccggcactcctgggttaaagggccaggctggcatccct
ggcacccctggcatccctggcaagaggggctacaggggtgagaagggagagccgagcatt
gcagcccaaggaattaaaggagaaccaggttcacctggattgccaggcctaatgggacac
aagggtgaaaagggtgaccggggagaggagggggaagcaggtcctgaaggtccagctgga
ccaagaggtcctccaggcccaactggggagccaggaaaggctgaaatccacaataatgaa
aatgatattcgcaatatacctctgatgggtccccctggattacctggacctccaggcccc
cctggcctcccaggtgcaaagggtgaagttggtctaccaggtccaccaggactggatggt
gagaagggacccagagggaagcctggagagcctggtcctgcagggccagctggtcctgaa
ggtcccagaggagagggtggtgtcatgggcttccccggacccaagggagacatgggtcca
tctggattacctggtcctaaaggcgaacctggggaaggagcaacgtcagaaatgatctat
ggtcctccagggcccccaggacctccaggaccggttggcccagcaggatctcaaggactt
tcagggcctaagggggagccaggcataggcatcagaggagaaaagggagcaacaggtcag
aagggtgacaagggagacagaggccatcttggactccctggtctaataggaccagctggt
gtgccagggccagcaggaccaaagggagagagaggtgaaaagggagacgcaggattacca
ggaccaactggacctcaaggcatccctggtttagtaggaccacaaggactcaaagggaac
cggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaagga
gcacctggattagatgccccctgtccgttgggggatgatggcttacctgtaccaggatgt
tggaataaaggtcaacatcctttccaactggctaagaagtag
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