Xiphophorus hellerii (green swordtail): 116737657
Help
Entry
116737657 CDS
T07363
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xhe03016
]
116737657
Enzymes [BR:
xhe01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
116737657
Transfer RNA biogenesis [BR:
xhe03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
116737657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
DUF3280
Motif
Other DBs
NCBI-GeneID:
116737657
NCBI-ProteinID:
XP_032446869
LinkDB
All DBs
Position
18:3591246..3634773
Genome browser
AA seq
751 aa
AA seq
DB search
MLALFTVISFLAGSLSTSDTKVPQDVRSPTENYLLWTWNNRLYVYSAAALLLGFCFLLQV
TRRKINHTKDSGSKDSGLKVQKAAKNKISSDKDGDVHVSGVKIFYGSQTGTAKGFASELS
QEVQTLGIPAEVIDMKDYDPDDRLADECVSKSVCVFLVATYSDGRPTENAEWFCKWLEEA
STDFRYGNSFLKGLRYAVFGLGDSVYVGHYNTVGKNVDKWLWMLSARRVLSRGEGDGNVV
KSRHGSVQADFRAWEVRFLSRLKALARGEKKSCSGNCKSGTSCKNRKKHGAQEEEEENGS
EVELIESSSEEEESGLSGEKMSRSVVDVEDLGNVMNNVKRAKGVKEDQGDGQMVKLSKQN
GVMKTADEEERREMITPALREALTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYG
IESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDPAEKILQDSLEKHQNMIRQFR
GVPGVKPERYEEGLAAKHCALSLVGEPIMYPEINTFLRLLHSHHISSFLVTNAQFPEEIR
NLVPVTQLYVSVDASTKDSLKKIDRPLFKDFWPRFLDCLRALGEKKQRTVYRLTLVKAWN
VEELQAYAELIALGQPDFIEVKGVTYCGESSASSLTMANVPWHQEVVAFVQQLADMLPRY
DIACEHEHSNCLLIAHDKFKVNGEWWTWIDYDRFQDLVQAHEDSGGQQSFSALDYTAKTP
SWALFGSNEQGFDPADTRFQRRNKTKDISGC
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgttagctttgtttacagttatttcctttcttgcgggctctttgtctacctccgacact
aaagtcccacaggatgtccgcagtcccactgaaaactatctgctgtggacgtggaacaac
agactctacgtttattctgctgctgctctgctgttgggtttctgcttcttactgcaggtt
acacgaaggaagataaatcatacaaaagattctggctcaaaggactctggtttgaaggtt
caaaaagctgcaaaaaacaaaatcagctcagataaagatggtgatgttcatgtttcaggg
gttaaaatcttctacggctcacaaactggaacagcaaagggttttgcctcggagctctcg
caggaggtgcagactttgggtatcccagcggaggtgatagacatgaaggactacgaccca
gacgatcgacttgcagacgagtgcgtcagtaagtccgtctgcgtgtttctcgtggccacg
tactcggacggacggcccaccgagaacgccgagtggttctgcaagtggctggaagaagct
tccaccgacttccgctacggcaactccttcctcaaggggctccgctatgccgtgttcggc
ctcggcgactccgtctacgtcggccactacaacacggtgggtaaaaacgtcgacaagtgg
ctgtggatgcttagcgccaggcgagtgttgagcagaggagagggcgacggcaacgtggtg
aagagccgacacggcagcgttcaggcggacttccgggcctgggaggtccggttcctgagc
cgcctcaaggctttggccagaggggagaagaagagctgcagcgggaactgtaagagcggc
acttcctgtaagaacaggaagaaacacggagcgcaggaggaggaggaggagaacggatcc
gaggtggagctgattgaatccagcagtgaggaggaagagtccggcttgtcgggtgagaaa
atgtcgcgctccgtggtcgacgtggaggatctgggcaacgtcatgaataacgtcaagaga
gcaaagggtgtgaaagaggatcaaggagacggccaaatggtgaaactgtccaaacagaac
ggagtgatgaagactgcagatgaagaggagagaagggagatgatcaccccggcgctgagg
gaagcactgaccaagcaaggttataagttaattggaagtcactccggagtgaagctgtgc
cgatggaccaagtctatgttacgagggagaggaggttgttacaaacacacgttttacggc
atcgagtcgcatcgctgcatggagacgacgcccagcctggcctgcgcaaacaaatgcgtc
ttctgctggagacaccacaccaacccggttggcaccgagtggcgctggaaaatggaccct
gcagagaaaatcctgcaggactccctggagaagcaccagaacatgatccgacagttcaga
ggcgtccctggagtgaagccggagcgatacgaggagggtttggccgccaagcactgcgcc
ctgtccttggtgggcgagccaatcatgtacccagaaatcaacacctttcttcgcctcctc
cactctcatcacatctccagtttcctggtcacaaatgctcagttcccagaggaaatcagg
aacctggtgccggtgactcagctgtacgtcagtgtggatgccagcaccaaggacagcctg
aagaagattgatcggcctctttttaaggacttctggcctcgtttcctcgactgcctcagg
gctttgggagagaaaaagcagaggacggtttaccgactgacgctggtgaaagcctggaac
gtggaggagctgcaggcctacgccgagctcatcgctctgggtcagcccgacttcatcgag
gtcaagggcgtgacgtactgcggggaaagctcggccagcagtctgaccatggccaacgtt
ccctggcaccaggaagtggtcgccttcgtccagcagctggctgacatgctgcctcgctac
gacatcgcctgtgagcacgagcactccaactgtttgctcatcgcacacgataagttcaag
gtgaacggcgagtggtggacttggatcgactacgaccgtttccaggatctggtccaggct
cacgaagacagcggcgggcagcagagcttttcggccttggactacaccgccaagaccccc
agctgggctttgtttgggtcaaacgaacaagggttcgacccggccgacactcgcttccag
cggcgcaacaaaaccaaagatatctctggatgctga
DBGET
integrated database retrieval system
