Xenopus laevis (African clawed frog): 108714533
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Entry
108714533 CDS
T01010
Symbol
tnrc6b.L
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108714533 (tnrc6b.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108714533 (tnrc6b.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108714533 (tnrc6b.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108714533 (tnrc6b.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
M_domain
RRM_occluded
RRM_1
YniB
Motif
Other DBs
NCBI-GeneID:
108714533
NCBI-ProteinID:
XP_018114333
Xenbase:
XB-GENE-17330352
UniProt:
A0A8J0V3F5
LinkDB
All DBs
Position
4L:119644131..119733980
Genome browser
AA seq
1922 aa
AA seq
DB search
MQNGCQSLVYAHFPLERKKQKSIKKRVWNLLLCIAFLPIFILCTCVHFFCTGFTLYASNR
WIIAQLHFIREKEQEREEQLMEDKKRKKEDKKKKEAAQKVTEQKTKVPEVTKPSSSQATA
ASLPGSSPSPPVNGGNNAKRVAVPNGQPPSTARYMPREVPPRFRCQQDHKVLLKRGQPPP
ASCMLPGGGAGAPPSTTAPGACPGNAQPGAGALLPGESGPTTESSSGAAANSNYANSTWG
SGGPTSSGPTANPPHAWDKVIVDGSDMEEWPCIASVDAEPPSDNATDNNSASNSASEKGP
PQGSTTSHKGRGGQQQQPGSECIQGVWKSDPKAKPVPSSNPAAEGVNRLGNWRNGGGSER
TGSASGFSNFNPNTNPTAWPALVLEGNRKGNPESDSSFSGTQLGPVGLTSREQQSKMENV
GSSFAGSGREPATTHHTDGPKNGNTNSTNSNTSNPPDNKGTAFGVGSLDSCRGSDSPSQS
TGERKNGGVVSWGAGRGQSATGDANCGHSNSGSNGREREDARKAPSSHRPNGSRGESWES
KSGNGSWGYSQQADPNEVKWGEGNKLGAGGASQGEWKQPAGHEDLKVGEWGGLNQGNSST
GAWDNQKGHSLSDNQGNTSSAACWGRASSSAGSEAGGQSTGSNPKAGGSGGSGDSLNSSN
RRSNRPALPDSQAALQTLLSRTDLDPRVLSNSGWGQTQIKQDAAWEGEQVPARPEGKSDR
GTDGWENVSQAKTSGGWGDAPSQSNQNKSGWGEPPVPTPSTQEWKDTKATGWNDYKNSPT
GWVGGGGGGIGTRPEDKAVPGWNNESAGATEPGWGTRQSNPGGGWSAGKNGWGGSSSEDI
ETPKGPGGWEGSGSKSSSGWGEVGQNDVGSWGNGANSNTAPRTGWEETKRPQGGGNWGEA
ARPQLPWNKQQEATPASANPGSWGGSQAPPPPGNGRSQPSSGWKGGPQPTVSKEEESSGW
EEPAPQSIAHKMDIDDGTAAWGDPGSYNYKNVSLWDKNAQAGPGQMTREQGIPGSITNKA
APSVWSKNKGPPADNGTSAWGEPTEPASGWGEGEESGPPTPGWGNAPQVTPSAMKSGTKS
MQDGWGESDGPVTGTRHSSWDEEEEGGVWNSAGSQGSGSSHNSAGWGQGGKKPQIKGPLK
GGSNDSWMNTLPKQFSNMGLLSQVDDPSAIKMDHPGGLPDKKFETDKRGVNLGDFNDMMR
KDRSGFRLNNSKEMGAADSGPYFEKLTLPFSNQDGCLGDEAPCSPFSPSPSYKLSPSGSS
LPSMGLGAIGSGLNPQNFAARQGGNHGLFGNSGAQSRGMHNPVPSLNSSPNLRAQVPPQF
LSPQVSASMLKQFPNSNMNPGLFNMGPQLSPQQIAMLSQLPQIQQFQLACQLLLQQQQQQ
QQQQQQQQLLQNQRKISQAVRQQQEQQQIARMVSALQQQQQQQQQQQQQQQRQPGMKHSP
SHPAGPKAHLDTVGLSDMQAKGHMPYGSGFGSSGMEYGTVGKETGAESRFKQWTSMMEGL
PSTVSQDASLHKNGSIAPPLKNRGGSPYHQFDMMSTDVLGGHGGPTAESWLPAKSPPSNK
IGNKSINASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGPAPSPIVDTDHQLLQDTP
TGSNSSLNTSLPSPGAWPFSASENIHSTSALSAKFGDYKSTWSPDPIGHNPSHHSNKMWK
NQMSRNSPGLPRPPPGLTNNPKSTNSPWNSTAPRSVRGWGGQDSRMASASAWSDGGSVRP
SYWLILLNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQSALHMC
VLGNTTILAEFATDEEVSRYLAQAQPPAPSAPGAGWQPLEVGPNHPAEPVGPALNLFGGA
TGLGQWSSGGGGSDLSGVSLWGTPSSYTSSLWGVPSTEDAHRMGSPAPLLPGDLLGGGTD
SI
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatggctgccagtctctcgtttatgcacatttccctttagagaggaaaaaacag
aaatctataaaaaagcgtgtgtggaatttattattgtgtattgcatttttgcctattttt
attttgtgtacttgcgttcattttttttgtactggatttaccttgtatgcctcaaatcgc
tggattatagcacagttgcactttataagagagaaggagcaagaaagggaagaacagtta
atggaagacaagaaaaggaagaaagaggataaaaagaagaaagaagctgctcagaaggtc
acagaacaaaaaaccaaagtgcccgaagtgacgaaaccaagttcaagccaagcgacggcc
gccagcctacctggcagctccccctcgccaccagtcaatggtggcaacaatgccaaaagg
gtggcagtgccgaacggacaaccgcccagcaccgcccgctatatgcctcgggaggtgccg
ccgcgattccgctgccagcaggaccataaagtgttactgaagcgtggacagcctcctcca
gcgtcctgtatgctgccggggggaggagcaggggctcccccctcaaccactgctccaggg
gcctgccccggcaacgcacagccaggggcgggggcactgctgccaggggagagcgggcct
acaacagaatcatcatcgggggcagctgctaattcaaattatgcaaattccacttggggc
tcaggaggccccaccagcagcggccccaccgcaaaccctccccatgcctgggacaaagtg
attgtagacgggtcggacatggaagagtggccttgcatagccagcgtggacgcagagccc
ccttccgacaacgccacagacaacaacagtgcctcgaactcagcctcggagaagggaccc
ccacaaggaagcaccactagccacaaagggcgggggggccagcagcagcagcctggtagt
gaatgtatccagggcgtctggaaatctgaccccaaggctaagcctgtcccgtcttccaac
cctgctgcagagggtgtaaatagactgggaaactggagaaatgggggtgggtcagagaga
acaggttctgcctctggtttcagcaactttaatccaaataccaacccaactgcttggcct
gcccttgttctggaaggcaacaggaaagggaacccagagtcagacagcagcttttctggc
acacaactcggcccagtgggtttgacctctcgggagcagcagtcaaagatggaaaacgtg
ggttccagctttgcaggatcgggcagggaacctgccacaacccatcacactgacggacca
aaaaatggaaacactaactctacgaactcaaatacttcgaacccccctgataacaaggga
acagcttttggggtgggctcattggattcctgccggggttcagactccccttctcaaagc
actggagaaagaaagaatgggggggtggtctcttggggagcaggaaggggtcagtctgcc
acaggagatgctaattgtggacacagcaactccgggagcaatggacgagagagggaggac
gcaaggaaagcgccttcatctcataggcccaatgggtcaaggggggaatcttgggaaagc
aaaagtgggaatggttcttggggttacagccagcaggcagaccccaatgaagtgaaatgg
ggtgaagggaacaaattgggggctggaggggcgtctcagggagaatggaagcagccagcc
gggcatgaggacttaaaggtgggagagtggggaggcttgaaccaaggaaattctagcact
ggagcatgggacaatcagaagggccactctctatcggataaccagggcaacacgtcatcg
gcagcctgctgggggcgagcctccagctctgcaggaagtgaagcaggggggcaaagcact
ggaagcaaccctaaggcaggtggcagtgggggaagtggagacagcctgaactccagcaat
cgacgttcaaataggcctgccctcccagacagccaggctgctcttcagactttactgagc
cgcactgacttggatccccgagtgctgtccaactctggctggggccaaacccagatcaag
caagatgcagcatgggagggtgagcaagtacccgctcgacctgaaggcaaatcagaccgt
gggactgatggttgggagaacgtgtcccaagccaaaacctcagggggttggggggatgct
cccagccaaagcaatcaaaacaagtcaggctggggggagccccctgtccctacaccttca
acccaagaatggaaggacaccaaagcaactggctggaatgactataaaaacagcccaact
ggttgggttggtggaggaggtggggggattggaacacgaccagaggacaaggcagttcca
ggatggaacaatgaaagtgccggggctacagagcctgggtggggtacgcgccagtctaat
cctggaggtggctggtcagcaggaaaaaatggttgggggggaagcagcagtgaggacata
gagactcctaagggccctgggggctgggaaggctcaggaagtaaatcctcctctggctgg
ggtgaagttggacaaaatgatgttggttcttggggtaatggggcaaactcaaatacagct
ccacgaactggttgggaggagactaagaggccccagggaggaggaaactggggtgaggca
gctaggccccaactaccctggaacaaacagcaggaagcaacgccagcttcagcaaatcct
ggctcctggggaggctctcaggctccccctccacctggaaatgggaggtcacagccaagt
tcagggtggaagggtggccctcagccaactgtttcgaaggaggaagagtcaagcggctgg
gaggaaccagcaccacaatccattgctcataaaatggacattgacgatggaacagcagct
tggggagatcctggcagttacaactacaaaaatgtcagcctgtgggacaagaatgctcaa
gcaggccctgggcagatgactcgggagcaaggaatacccgggtcaataacaaacaaggca
gctccctcagtgtggagtaaaaacaaaggaccgccagctgacaatgggacatcagcctgg
ggtgagccaactgagcctgcttcaggttggggagaaggtgaggagtcaggtccaccaact
ccaggatggggaaatgcaccccaagtaactcccagtgccatgaaatctggtacaaaatct
atgcaagacggctggggtgagagtgatgggccagtgacaggaacacgtcacagcagctgg
gatgaagaagaggagggtggagtctggaacagtgcaggatctcagggaagtggctcctcc
cacaactcagcaggttggggacaaggaggaaagaaaccacaaatcaagggtcccttaaaa
ggagggagcaatgattcctggatgaacaccttgcccaaacagttctccaacatgggattg
ttgagccaagttgatgatccctctgcaattaagatggaccatcctggagggcttccagat
aagaagtttgagacagacaagcgaggcgtgaatctcggggatttcaatgacatgatgcgg
aaggaccggtctggcttccgtctgaacaattccaaagagatgggagctgcagacagtggg
ccttattttgagaagctgactttgcctttctccaatcaagacgggtgccttggggatgag
gctccctgttcccccttttctccctcccctagctacaagctatctccctccggctcctcg
ctcccttccatgggcctgggggctatcggttctggtctcaacccccaaaacttcgctgct
agacaaggtggcaatcacggactatttggaaacagcggtgcacaatcgcgaggcatgcac
aaccctgtgccatcgctcaattcctctcccaacctccgggcacaagtgcctccccagttc
ctctctccccaggtctcggcctccatgctgaaacagttccctaacagtaacatgaatcca
ggactcttcaatatggggccgcagctatcccctcagcagattgcaatgctgagccagctt
cctcaaattcagcagttccagctggcatgtcagctcctcttgcagcaacaacaacaacaa
cagcaacagcaacagcagcagcagcttcttcagaatcagaggaaaatctcacaagcagtc
agacagcagcaggaacagcagcagatagcacgtatggtgagtgccctccaacagcagcag
cagcagcaacaacaacaacagcagcagcaacagaggcagccaggaatgaagcactctccc
tctcatcctgctggacccaaagctcatttagacactgttggcctctcagacatgcaagct
aaagggcacatgccgtatggctctggttttggctcaagtggaatggaatatggtacagta
ggtaaggagactggagcagagtctcgatttaaacagtggacatccatgatggaggggcta
ccgtccactgtttctcaagatgccagcctacataagaatggctccattgcacccccatta
aaaaatcgtggaggttccccctaccaccaatttgacatgatgtctacagatgttttggga
gggcatggggggccaacagctgagagctggttacctgccaaatcacccccttcaaacaaa
attggaaacaagtcaatcaatgccagctggcccccagagtttcagccaggagtgccatgg
aaagggatccaaaatattgatccagaatccgatccttatgttacccctggaagtgtgctg
gggggtccagccccatctcccattgtagatactgaccaccagctactgcaggacaccccc
acagggtccaattcttccctcaacacctcgctgccttcacctggtgcctggcccttcagt
gcctctgagaatatccatagcacttcagcactctctgcaaagtttggggactacaaatca
acctggtcaccagaccccataggacataacccatcacatcactcgaacaagatgtggaaa
aaccagatgtccaggaacagccctggactgcctcgcccacctccagggctcacaaacaac
cccaaatccaccaactctccctggaatagcacagcacctcgctctgttaggggctgggga
ggacaggactccagaatggcttccgcatcagcttggagtgatggtggatctgtgcgcccc
agctactggctgatccttctcaatctcacaccacagatcgatggttccaccctgcgaaca
atctgcatgcagcatggccccctgctgacattccatctcaaccttacccagggcacagct
ctaatccgatacagcaccaaacaggaggcagccaaggcccaaagtgccctccatatgtgt
gttctgggtaatacaactatcctggcggagtttgcaacggatgaggaggtgagccggtat
cttgcacaagctcagccaccagctccctctgctccaggagcaggctggcagcctttggaa
gtgggaccgaaccacccagctgaaccagtaggaccagccctgaacctttttggaggagcc
acagggctagggcaatggagcagtggaggtggtggtagtgacctgtcaggagtttccctc
tggggtacacctagcagctacacatccagtctgtggggtgtaccgagcacagaggacgcc
cacaggatgggcagccctgccccattactacccggtgaccttctgggaggagggactgac
tcgatatga
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