KEGG   Xenopus laevis (African clawed frog): 444796
Entry
444796            CDS       T01010                                 
Symbol
vps4b.L
Name
(RefSeq) vacuolar protein sorting 4 homolog B L homeolog
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03250  Viral life cycle - HIV-1
xla04144  Endocytosis
xla04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    444796 (vps4b.L)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    444796 (vps4b.L)
  09143 Cell growth and death
   04217 Necroptosis
    444796 (vps4b.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    444796 (vps4b.L)
   03400 DNA repair and recombination proteins [BR:xla03400]
    444796 (vps4b.L)
Membrane trafficking [BR:xla04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    444796 (vps4b.L)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    444796 (vps4b.L)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_22 AAA_14 AAA_5 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 AAA_24 nSTAND3 PhoH RNA_helicase AAA_17 AAA_28 Mg_chelatase AAA_7 Parvo_NS1 NACHT bpMoxR ResIII DUF5906 Viral_helicase1 MCM
Other DBs
NCBI-GeneID: 444796
NCBI-ProteinID: NP_001086367
Xenbase: XB-GENE-17336274
UniProt: Q6DJK7
LinkDB
Position
6L:complement(90414888..90431176)
AA seq 443 aa
MAANGTNLQKAIDLASKASQEDKAKNYEEALRLYQHSVQYFLHVVKYDAQGEKAKASIRS
KCIEYLDRAEQLKAYLKKNEKAPAKPVKEGPPRAADDKGNESDEGDSEDPEKKKLQSQLQ
GAIVMEKPNVKWCDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS
YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREHKPSIIFIDEIDSLCG
SRSENESEAARRIKTEFLVQMQGVGVDNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLP
EEHARTDMFKLHLGTTPHSLSEPDFRDLGKKTNGYSGADISIIVRDALMQPVRKVQSATH
FKKERGKSPLDPNVTRDDLLTPCSPGDPNAVEMTWVDVPGDKLLEPVVCMPDMLKSLAHT
KPTVNDEDLAKLRKFTEDFGQEG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggctgccaacgggaccaatctacagaaagctattgaccttgccagcaaggcatctcag
gaagacaaagcaaagaactatgaagaagctcttcgtttataccagcattctgtgcagtat
tttctgcatgtggttaaatatgatgcacaaggagaaaaggctaaagcaagcatcagatca
aagtgcatagaatacctggacagagcagagcagctgaaggcatatctaaagaaaaatgaa
aaagctcctgcaaagccagtcaaagaaggaccacctagagctgctgatgacaaaggtaat
gagagtgacgaaggagattcagaagatcctgaaaaaaaaaaattgcagagtcagctccaa
ggtgccattgtgatggagaaaccaaacgtgaaatggtgtgatgtagctgggttagaagga
gcaaaggaagctctcaaggaggctgtaatcttaccgataaaatttcctcatctgttcaca
ggcaagaggactccttggagaggaatacttctgtttggacctccagggacaggaaaatcc
tatctagccaaggctgtagcaacagaggcaaataattctacattcttctcaatatcctca
tctgaccttgtttcaaaatggttaggagaaagtgagaaattggtgaaaaatttattccag
cttgccagggaacacaagccatcaattatctttattgatgaaattgactccctttgtggg
tcaagaagtgagaatgaaagtgaagctgctcgaaggattaaaacagagtttttagtccag
atgcaaggtgttggagtggataatgaaggcattttggttttgggtgctacaaatattcca
tgggtgctagactccgccatccgcagacggtttgagaagcgaatttacattcctctgcct
gaagagcatgcaagaacagatatgtttaaactccaccttgggacgacaccacacagtctt
tcagaaccagacttcagagaccttgggaagaagactaatggatattctggggctgatatt
agcatcattgtcagagatgccctgatgcaacccgtcaggaaagttcaatcggccacacat
ttcaaaaaggaacgagggaaatctcctcttgatccaaatgttacacgggatgatctactt
actccatgctcacctggcgatccaaatgctgttgaaatgacctgggtggatgttccaggg
gacaagttattagaaccagttgtatgcatgcctgacatgctaaagtcactggctcacaca
aaaccgactgtgaatgatgaggaccttgcaaaattaaggaaattcacagaagactttgga
caggaaggttaa

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