Xenopus laevis (African clawed frog): 495008
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Entry
495008 CDS
T01010
Symbol
cpsf7.L, cpsf7
Name
(RefSeq) cleavage and polyadenylation specific factor 7 L homeolog
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
xla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
495008 (cpsf7.L)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
495008 (cpsf7.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
495008 (cpsf7.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
495008 (cpsf7.L)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
TPR_12
Motif
Other DBs
NCBI-GeneID:
495008
NCBI-ProteinID:
NP_001088183
Xenbase:
XB-GENE-5754464
UniProt:
Q5XHG2
A0A974HN12
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Position
4L:15684643..15696094
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AA seq
453 aa
AA seq
DB search
MADGADLIDIYAEEEFIQESEFAAEQVDLYDDVLAVPAIPSSYTDGNRNSNVLEPPSLVQ
STSPLSNNKIPEVLYHSGRNRVSMYIGNFSWWTTDQQLLALIRSVGIKDHVELKFAENRA
NGQSKGFAEVIVSSESSMNLILEHLPQKKLNGKKLDVRPANRQNLSFFEAFSRKKIPPRA
NSKGSSDLTDGSSTPGEPAMLSPPAEAPKRIMPLLTNISYSEPPSRIPVMTLQRPTMTLP
PPPPQSPTLNAVYRPPPIPPLHYTHLMPPPPRLLPPPLGMPPPGGVPPALHLNPAFFPPP
NSVLCPPPEPFKVIPNPYVHGRDPKGPFPLVSEAEFEELMNRNRAISRSALSNAVCGATS
GDYTNAIKTLETAIAVIKESRVANDDRCRVLLTSLKDCLHGIQDKANSSRKRHRSRDRSP
SRSREGSSRRHRDSHDRSDEYYQERHRDKDRHR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggggccgatctgattgatatttacgccgaggaggagttcatccaggagtcg
gagtttgctgctgagcaggttgacctgtatgacgacgtgttggctgtgccagcgattcct
tcttcttatactgatggcaacagaaacagcaatgtcctggaaccaccatctcttgtacag
agcacctctcccctgtcaaacaacaagattcctgaagtcctgtaccacagtgggcgcaac
agggtgtccatgtacattggaaatttctcctggtggacaacagatcagcagctgctcgct
ctaattcgctccgtgggcatcaaagatcatgtggaattaaaatttgcagagaatagggct
aatggccagtccaaagggtttgcagaggtcatcgtctcctctgaatcctccatgaatctt
atactcgagcatttgcctcagaagaagctgaatgggaagaagctggatgtgcgaccagcc
aatcggcagaacctgtccttctttgaagcattttcacgcaagaagattccacctcgagca
aattcaaagggatcttcagatttaacagatgggtcttctaccccgggcgagcctgccatg
ttgtcccctccagccgaggctccaaaaaggattatgccgctgctcaccaacatctcttat
tctgaacctccttctcgcatccctgtcatgacacttcaacgacccactatgactcttcct
cctcctcctcctcagtctcccacactgaatgctgtataccggccaccccctattccccct
ctacactatacccatttaatgcccccacctcctaggctgttgccacctccattaggcatg
cctccacctggcggtgtgccacctgccctccatctaaaccctgccttctttccccctccc
aattctgtcctttgtcccccaccagaaccgttcaaggtgattcccaacccctatgtacat
ggccgagacccaaaagggccgtttcctctagtaagtgaagccgagtttgaagaattgatg
aacagaaatcgtgcaatctccaggagcgcgctctctaatgcagtatgcggggcaacgtca
ggggattacacgaatgccatcaaaactctagaaacagccatcgctgtgattaaggagtct
cgtgtggccaacgacgatcgctgccgagtcctgcttacctccctcaaagactgtttgcat
gggattcaggacaaagccaactcttccaggaagagacaccgctccagagatagatccccg
agccgatcaagggaaggcagcagccggcgtcacagagactcgcacgaccgatcagatgaa
tattatcaagagcgtcatcgtgataaggatcgacaccgctga
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