Xiphophorus maculatus (southern platyfish): 102232000
Help
Entry
102232000 CDS
T02923
Symbol
col1a1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102232000 (col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102232000 (col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102232000 (col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102232000 (col1a1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102232000 (col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102232000
NCBI-ProteinID:
XP_023204469
Ensembl:
ENSXMAG00000016028
LinkDB
All DBs
Position
16:complement(25314292..25336578)
Genome browser
AA seq
1445 aa
AA seq
DB search
MFSFVDLRLVLLLSATVLLARAQGEDDRTGASCTLEGQVFADRDVWKPEPCQICVCDSGT
VLCDEVLCQDPIDCLNPIVPQGECCPICPDDGYQSAQVEGPKGDSGPKGERGPPGPPGRD
GLDGQPGMPGPPGPPGPPGLGGNFSPQMSGGYDEKSPAMPVPGPMGPMGPRGPPGAQGQS
GPPGPNGHPGEPGEAGASGPMGPRGPAGPPGKNGEDGEAGKPGRGGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEAGAPGENGTPGAMGPRGLPGERGRAGPS
GAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGPKGDVGAQGARGPEGPAGARGEPGNP
GPAGPAGPSGNPGADGASGAKGGPGAPGVAGSPGFPGPRGPPGPQGAAGAPGSKGNTGEV
GAPGFKGEPGAKGEAGATGVQGPPGPAGEEGKRGSRGEPGAAGARGAPGERGGPGGRGFP
GSDGPAGPKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPGSPGPDGKLGAS
GAPGQDGRPGPPGPGGARGQPGVMGFPGPKGAAGEAGKPGERGVMGPTGAAGASGKDGEV
GPQGPPGPSGPAGERGEAGPSGSPGFQGLPGPQGAVGESGKPGEQGMPGEPGAAGLAGSR
GDRGFPGERGAPGPIGPAGTRGSPGSPGSDGAKGEPGAPGAPGAVGPPGLQGMPGERGAA
GLPGLRGDRGDQGAKGADGAPGKDGPRGLTGPIGLPGPAGAPGDKGENGAPGLVGPAGAR
GAPGERGEAGPPGPAGFAGPPGADGQPGAKGESGDNGAKGDAGPPGAAGPTGAPGPQGPV
GNTGPKGTRGAAGPPGATGFPGAAGRVGPPGPAGNSGPPGPPGPSGKEGPKGNRGETGPA
GRPGEIGASGPPGNPGEKGSPGADGAAGASGLPGPQGIAGARGIVGLPGQRGERGFPGLP
GPAGEIGKPGSAGPGGERGPPGPMGPPGLAGAPGEPGREGNPGNEGPSGRDGAPGPKGDR
GESGAAGAPGAPGPSGAPGPVGPAGKSGDRGETGSAGPAGSAGPAGPRGPAGPAGARGDK
GETGEAGERGMKGHRGFTGQQGPPGPPGSSGEAGPAGSSGPAGPRGPAGSAGAPGKDGMS
GLPGPTGPPGPRGRSGEMGPSGPPGPPGPPGPPGAPGGGFEIGFITQEKAPDPFRMFRAD
DANVLRDRDLEVDSTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWIDPD
QGCTQDAIKVYCNMDTGETCITPTQPEVAKKNWYMSKNIKEKKHVWFGEAMNDGFQFDYG
SEGSLPEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDAAAGNLKKSLLLQGSNEIEIR
AEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEFGLEVG
PVCFL
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggtgctgctgctcagcgccacagtgctcctggcc
agggcgcagggcgaggacgaccgcacaggtgccagctgcacccttgaaggtcaggtgttt
gcggaccgggacgtgtggaaaccagagccatgtcaaatctgtgtgtgtgacagcggaact
gtgctgtgtgatgaggttctatgccaagacccaattgactgcctcaatcccatcgtcccc
cagggcgagtgctgccccatctgccccgatgacggctaccagtctgctcaggttgaggga
cccaagggagacagtggacccaagggagagcggggccctcctggcccccctggtagagat
ggcctggatggccaacctggtatgccaggacctcccggccctcccggaccccctggtctt
ggtggaaacttctcccctcagatgtctggtggttatgatgagaaatcccctgctatgcct
gtgcctggaccaatgggcccaatgggaccccgtggacctcctggagctcaaggtcaaagt
ggacctccaggacccaatggccatcctggtgagcctggagaggctggagcctctggtccc
atggggccacgcggacctgcaggacctccaggaaagaacggagaggatggtgaggctggc
aaacctggtcgtggtggtgagcggggaccttctggtccacagggtgctcgtggtttccca
ggaacccccggacttcccggaatcaagggtcacagaggattcagcggtctggatggtgct
aaaggagacactggccctgctggacccaagggagaggctggagcccctggtgagaatgga
actcctggtgctatggggccccgtggtctgcctggtgagaggggtcgcgcaggtccttct
ggagctgctggagcccgtggtaacgatggtgctgctggtgctgctggacctccgggtccc
actggtcctgctggacctccaggattcccaggtggccccgggcccaagggtgatgttgga
gcacagggtgcacgtggacctgagggccctgctggagctcgtggagaacctggtaaccct
ggacccgctggcccagctggaccttctggaaaccctggagctgatggagcctctggtgct
aagggaggccctggtgcccctggtgttgctggatctcctggtttccctggaccacgtgga
cctccaggaccacagggtgcagctggtgcccctggatccaagggtaatactggtgaagtt
ggggccccaggattcaagggagagcctggtgcaaagggagaggctggtgctacaggtgtt
cagggacccccaggacctgctggtgaggagggcaaaagaggatccagaggagaacccggt
gctgcaggtgcccgtggagcccctggagagcgtgggggtcctgggggccgtggtttccct
ggttccgatggccctgctggacccaaaggtgcccctggcgagcgtggtgctcctggtctc
gttggacctaaaggttccaccggtgagcctggtcgtactggtgagcctggtctccctgga
gctaagggtatgaccggcagccctggcagccctggacctgacggcaaactgggagcttct
ggagcccctggacaagatggacgtcctggaccccctggccctggtggagcaagaggtcag
cctggagtcatgggatttcctggaccaaagggagctgctggtgaggctggaaagcctggt
gagagaggagtcatgggacccactggtgctgctggagcttctggaaaggatggtgaagtt
ggtcctcaaggtcctccaggtccctctggtcctgctggtgagagaggagaggcaggacct
tctgggtcccctggattccaggggcttcctggacctcagggagccgttggtgagagtggc
aagcccggagagcagggtatgcctggtgagccaggagctgcaggtcttgctggatccaga
ggcgacagaggattccccggtgagcgtggtgcccccggtcccattggccccgctggcacc
cgtggatcccccggttctcctggtagtgatggtgctaagggagaacctggagcccctggt
gctcccggagctgttggtcctcctggactgcagggaatgcctggtgagcgcggagctgct
ggtcttccaggactgagaggagacagaggtgaccaaggagctaagggtgctgatggtgca
cctggtaaagatgggccccgtggattgactggaccaattggacttcctggcccagctggc
gctcctggtgacaagggagagaatggtgcccctggacttgtcggccctgctggagcccgc
ggagcccctggtgagcgcggtgaagctggaccacctggacctgctggatttgctggacct
cctggtgctgatggacaacctggtgctaagggagagtctggagataatggtgctaaggga
gatgctggacctccaggcgctgccggaccaactggtgctcccggacctcagggtcctgtt
ggaaacactggtcctaagggaacccgtggagcagctggacctcctggtgctacaggcttc
cctggagctgctggcagagttggccctccaggccctgctggaaactctggtccccctgga
cctcctggaccatctggcaaggagggacccaaaggaaaccgtggtgagactggacctgct
ggtcgccctggtgagattggtgcttctggacccccaggaaatcctggagagaagggaagc
cctggtgcagatggtgctgctggagcttccggtctgcctggaccccaaggtattgctgga
gcacgtggcattgttggtctgcctggacagagaggagagagaggtttccctggtctccct
gggcctgcaggagaaattggaaagcctggatctgctggccctggtggtgagcgtgggcct
cccggacccatgggaccccctggtcttgctggtgcccctggagaacctggacgtgaggga
aaccctggtaatgaaggaccatctggacgagatggagctcctggacccaagggagaccgt
ggagagagtggcgctgctggagcccctggtgcccccgggccctctggtgcccctggacct
gttggacccgctggaaagtctggtgaccgtggagagactgggtctgctggccccgctggc
tctgctggccctgctggacctcgtggccctgctggacctgctggagctcgtggagacaag
ggagagaccggagaggctggagagagaggcatgaagggacacagaggatttactggccaa
cagggacctcctggaccacctggatcctctggagaagctgggcctgctggttcttctgga
cctgctggacccagaggtcctgctggatctgctggtgctccaggtaaggacggtatgtct
ggtcttcctggacccactggacctcctggaccccgtggacgttctggagagatgggacct
tctggtcctcctggacctccaggacccccaggacctcctggtgcccccggtggtggattc
gaaattggtttcattacccaggagaaggcccctgatcccttccgcatgttccgtgctgat
gacgctaatgttctccgtgaccgcgacctggaggtggacagcaccctgaagagccttagt
caacagattgagcagatccgcagccctgacggaaccagaaagaaccctgccagaacttgc
agagatcttaagatgtgccaccctgactggaagagtggtgagtactggattgaccctgac
cagggctgcactcaggatgccatcaaggtctactgcaacatggacaccggagagacctgc
ataacaccaactcagcctgaggttgccaagaagaactggtacatgagcaagaacatcaag
gagaagaagcacgtctggttcggagaggctatgaatgacggcttccagttcgattacggc
agcgagggttctctgccagaggatgtcaacattcagctgaccttcttgcgtctcatgtct
actgaggcatcccagaacatcacctatcattgcaagaacagcattgcctacatggacgct
gctgctggcaacctcaagaagtccctccttctccagggctccaatgagattgagatcaga
gctgagggcaacagccgtttcacctacagtgtcctggaagatggatgcacgtcacacacc
ggaacatggggcaagacagtcattgactataagacaacaaaaacatctcgcctccccatc
attgatattgctcctatggacgttggtgctccagaccaggagtttggccttgaagttgga
cctgtctgtttcttgtaa
DBGET
integrated database retrieval system
