Xanthomonas oryzae pv. oryzae MAFF 311018: XOO1959
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Entry
XOO1959 CDS
T00360
Symbol
XOO1959
Name
(GenBank) RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO1959 (XOO1959)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xom03019
]
XOO1959 (XOO1959)
03016 Transfer RNA biogenesis [BR:
xom03016
]
XOO1959 (XOO1959)
Enzymes [BR:
xom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XOO1959 (XOO1959)
Messenger RNA biogenesis [BR:
xom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XOO1959 (XOO1959)
Transfer RNA biogenesis [BR:
xom03016
]
Prokaryotic type
tRNA degradation factors
XOO1959 (XOO1959)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_20
HTH_11
RNase_II_C_S1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
BAE68714
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All DBs
Position
2165344..2167770
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AA seq
808 aa
AA seq
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MPDFLVRAAAGASTKSANKRAADKASNAASQPPAALPTPPAPRAPHPRKSGPPAPPPERF
QTAAPPAAAEFKDPHADREALRYAEPIASREAILQLLEACDGPQTAEEIAEQLNLSDRID
ALGKRLAAMVREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPF
EMRKVMHGDRALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQ
RNVQIAPDGIGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHEL
PHEFPQEVLDEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADGFR
LVVAIADVSNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFV
CDMQVGGDGEVTGSRFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQL
YHVLSKARTHRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARY
LLSMHVPAPYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAA
LLESVLLRSQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEK
FIYTPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTGFGLFV
ELTQSKVNGLVHVTQLPQDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEGRKID
FRLAEEGAAPEAPLPLRETSTKRKKKSS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacttcctggtccgtgccgccgccggcgcgtcgaccaagtccgccaacaagcgc
gctgccgacaaagcttccaatgctgcgtcgcaaccgccggccgccctgccaacgccgccg
gccccgcgcgcaccgcatccgcgcaagagtggcccacctgcgccgccgccggaacgcttc
cagaccgccgcgccgcccgctgctgccgaattcaaggatccgcacgccgaccgcgaggcc
ctgcgttatgcagagccgatcgccagtcgcgaagcgatcctgcagctgcttgaagcctgc
gacggcccgcagaccgctgaagaaattgccgagcagctcaatctgagcgatcgcatcgat
gcactgggcaagcgcctggccgcgatggtgcgcgaagcgcaactggtgcaaaaccgccgc
ggcggctatgcgccggtgcagcagaccagcctgatcgctggggtggtgatcgccaatccg
gagggcttcggtttcctcaagcccgacggcggtggcgatgacctgttcctgccgccgttc
gagatgcgcaaggtcatgcacggcgaccgcgcgttggccaatgtcaccggcatcgaccgc
cgcggccgtcgcgaaggtgcgattgcgcgcgtgcttgagcggggcatgtcgcgcatgctg
gggcgctttttctatgagcacggcgtggcttacgtcgatcccgatgacaagcgcatccag
cgcaatgtgcaaatcgccccggacggtatcggcgaggcgcgcgaaggccagttggtggtt
tgcgaactgatcgcgccgccggacgcgcgccgcccggcgatcggcaagatcatcgcggtg
cttggcgacaagctgaccccgtcgctggtggtggaaatggccatccacggccacgaactt
ccgcacgagttcccgcaggaagtgctggacgaagcggcggctgtgccgttggtggtcgag
ccgcagatgatcggtgggcgcgtggatctgcggcagatgccgctggtcaccatcgacggc
gaagacgccaaggatttcgacgacgcggtgtattgcgaacccaacgccgacggcttccgt
ctggtggtggcgatcgccgacgtgtccaactatgtgcgtcccggcacgccgctggatgac
gaagcgcaaaagcgcgccacctcggtgtatttcccgggattcgtggtgccgatgctgccg
gagacgctgtccaacggcatctgctcgctgatgcccaaggtcgatcgcatgtgtttcgtc
tgcgacatgcaggtgggaggcgatggcgaagtgaccggctcgcgtttttacgaagcggtg
atgaactcgcatgcgcgcctgacctacaaccaggtgtggaaggcggtgggcgaaggcgat
gccgacaccaaggccttcatcggcccgttgctgccgcaagtgcagcgtctgcatcagctg
taccacgtgctgtcgaaggcgcgtacgcaccgtggtgcgatcgaattcgaaacctccgaa
gtgcgcttcgtgctcgacaataccggcgaggtcacccaggccggcatgctggtgcgcaac
gatgcgcacaagctgatcgaagaatgcatgatcgccgcgaatgtcgaggcggcccgctac
ctgctgagcatgcatgtgccggcgccgtaccgtgtgcacgagcggccgccggagagcaag
tacgaagacctgctggagttcctcaaggaattccagctgagccttcccgcatggagcaag
gtgcgccccggcgattacaccaagctgctgaagaaggtgcgtgcgcgtccggacgcggcg
ttgctggaatcggtgctgctgcgcagccagagcctggcggtgtattcgccggaaaataac
gggcacttcggtctggcgttggaggcgtacgcgcacttcacctcgccgatccggcgttac
ccggatctgctggtgcatcgcgcgctcaagcacgccttgaccggtgccagcccggaaaaa
ttcatctacaccccgcgtcagatggcggcgttgtcgctgcagtgctccgaacgcggccgg
cgtgccgacgaagccgagcgcgaagtggacgagcgctatcgcgccgcgtggatggaaaag
catgtgggtggccagttcgacggcgtgatcagcggcgtgaccggattcggtctgttcgtg
gagttgacgcagtccaaggtcaatggcctggtgcatgtcacccagctgccgcaggactat
taccagttcgacccgatccgcaagacgctcagtggcgaacgccgtggtcgcgaattccgt
ctgggcgacccggtgcgcgtgctggtgctcaaggccagcatggaaggacgcaagatcgac
ttccgcctggccgaagagggtgcagcgcccgaagcgccgctgccgctgcgcgaaacgtcg
accaagcgcaagaagaaatcgtcctga
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