Xanthomonas oryzae pv. oryzae KACC 10331: XOO0175
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Entry
XOO0175 CDS
T00235
Name
(GenBank) Topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xoo03032
]
XOO0175
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO0175
Enzymes [BR:
xoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XOO0175
DNA replication proteins [BR:
xoo03032
]
Prokaryotic type
DNA Topoisomerases
XOO0175
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XOO0175
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AAW73429
UniProt:
Q5H6J1
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Position
complement(178678..179931)
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AA seq
417 aa
AA seq
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MACAHGVAVALTWPSFAALNNRRQPLDLCAMKAKRVLRNAAVTASTAGKLAAVATAAAVA
PAAVASAAAVAQAKATARAAGLTYVNDQQPGISRRKAGKSFSYRDADTLQRIRSLAIPPA
YTEVWICATPNGHLQATGRDARRRKQYRYHAGWAQVRGEGKFERVIAFGTALPKLRRRLR
RDLVLPGFPREKVLAIVVALLADTLVRVGNAEYARSNRSYGLTTLRNRHMEFLKGGRARL
RFRGKSGQDHDIEVDDKQLVTLIRQCQQLPGQSLFQYRDDDGQLQPVDSGEVNDYLREAM
GEEFTAKDFRTWGGTLAALQRLARLPLPERSTERALTQVQNDVIREVADALGNTPSVCRK
AYIDPCVFEGWRAGQLQAMAAGVRGERQWEAATLKFLTASRSKLKAQATPASKRKSA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcgcacacggcgttgccgttgcgttgacgtggcctagtttcgctgcgctcaac
aatcgccgccagcccttggacctgtgcgcaatgaaagccaaacgtgttcttcgcaatgcc
gcagtcaccgccagtaccgcgggaaagcttgctgcggtggccacggcggccgctgtggcc
ccggccgccgtggcaagcgcggccgccgtggcgcaggccaaggccaccgcacgcgcggcc
gggctgacgtacgtcaacgaccagcagcccggtatcagccgccgcaaagccggcaagagc
ttcagttaccgcgatgccgacaccttgcaacgcatccgttcgctggctattccgccggcg
tataccgaggtgtggatctgcgccacgcccaatgggcatctgcaggccaccggacgcgac
gcacggcggcgcaagcaataccggtatcacgccggttgggcgcaggtgcgtggcgaaggc
aagttcgaacgcgtgatcgccttcggtacagcgctgcccaagctgcggcggcggttgcgt
cgcgacctggtgctgccaggatttccgcgcgagaaggtgttggcgatcgtggtggcattg
ttggccgacaccctggtgcgcgtgggcaatgcagaatatgcgcgcagcaatcgttcgtac
gggctgaccacgctgcgcaaccggcatatggaatttctgaagggcggccgcgcgcgactc
agattccgcggcaaaagcggccaagaccacgacatcgaagtggatgacaagcaactggtc
acactgattcgccaatgccagcaattgcctgggcaatcgttgttccagtaccgcgacgac
gatggccagttgcagccggtggattcgggcgaggtcaacgactatctgcgcgaggcgatg
ggcgaagaattcaccgccaaggatttccgcacctggggcggcaccttggccgcattgcag
cggctggcgcgcttaccgttacccgaacgcagcaccgaacgcgcgctgacccaggtgcaa
aacgatgtcatccgcgaagtggccgacgccttgggcaacacgccctcggtatgccgcaag
gcctacatcgacccgtgcgtgttcgaaggttggcgtgcgggtcagctccaagcgatggcc
gccggtgtgcgcggcgagcgccaatgggaagcagccacgctgaagttcctgaccgcctcg
cgcagcaagctcaaggcacaggcaacgccggcgtcgaagcggaagtccgcatag
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