Xanthomonas oryzae pv. oryzae KACC 10331: XOO1723
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Entry
XOO1723 CDS
T00235
Symbol
recQ
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO1723 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoo03019
]
XOO1723 (recQ)
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO1723 (recQ)
Enzymes [BR:
xoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XOO1723 (recQ)
Messenger RNA biogenesis [BR:
xoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOO1723 (recQ)
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XOO1723 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAW74977
UniProt:
Q5H244
LinkDB
All DBs
Position
complement(1783741..1785537)
Genome browser
AA seq
598 aa
AA seq
DB search
MSSSAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRYRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLAHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRDRSAQRTGLPVQAQDLVLFNALRGLRAE
LAKQQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttccgcacacgaattgctcagccgcgtcttcggttacgacgacttccgcggc
ccacagcaggccatcgtcgaacacgtcgctgccggtaacgatgctctggtgctgatgcct
accggcggcggcaaatcgctgtgctaccaagtaccggcgctgctgcgcgatggcatcggc
atcgtggtttcgccgctgatcgcgctgatgcaggatcaggtcgaagccttgcgccagctc
ggcgtgcgcgccgaatttctcaattccacgctcgatgcggagaacgcccagcgtgtggaa
cgtgccctgctgtccggcgatctggatctgttgtacgtcgcgccggaacggctgctgacc
cagcgcttcctctcattgctggaacgcagccgcatcgcgctgttcgccatcgacgaggcg
cattgcgtctcgcaatggggccatgatttccgcccggaataccgccagctcaccgtactg
cacgagcgctggccacacatcccgcgcatggccctgaccgccaccgccgacccgccgacc
cagcgcgaaattgccgagcgcctggacctggtggacgcgcgccatttcgtcagttccttc
gaccgccccaacatccgctacaccgtggtgcaaaaggacaacgcgcgcaaacagctgcag
gaattcctgggccgttatcgcggctcggccggcatcgtttatgcgatgtcgcggcgcaag
gtcgaagaaaccgcgcagcaactgtgcgcacaaggattcaatgcgctgccctatcacgcc
ggcctgccagccgaggtgcgcgcagaaaaccaacgccgtttcctgcgcgaggacggcatc
atcatggccgccacgatcgccttcggcatgggcatcgacaagccggacgtgcgcttcgtg
gcgcacgtggatctgcccaagtcgctggaaggctactaccaggaaaccggccgcgccggt
cgcgacggcgaccctgccgaagcctggctttgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgaacaaggcgaagccgccgaagagcgcaagcgtctggagcgcgccaag
ctcgatcacctgctgggttactgcgaatccatgcaatgccgtcgccaggtactgctggcc
ggtttcggcgagacctatcccaaaccctgcggcaactgcgacaactgcctgacgccggct
gcggcctgggacgccacggtggcctcgcagaaagcgctcagttgcgtctaccgcagcggc
caacgcttcggcgtgggtcatctgatcgacatcctgcgcggcagcgaaaacgagcgcatc
aaacagttggctcacgatcaactgagcacctacggcatcggccgcgacctggacgaacgc
acctggcgcggcgtgtttcgccagctggtggcagccagcctgctggaagtggacagcgaa
ggccacggcggcctgcgcctcaccgatgccagtcgccaggtgctcaagggcgagcgccag
gtcatgatgcgccgcgaaaacccagccgccggacgcgaccgcagcgcacagcgcaccggc
ctgccagtgcaggcgcaggatctggtgctgttcaacgccttgcgcggcctgcgcgcagag
ttggcgaagcaacagaacgtgccggcctttgtcatcttccacgacagcaccttgcgcaac
atcgccgaacaacggcccacgagcatcgacgcattgtcgcgggtaggcggcatcggcggc
ggcaagctggcccgctacggcgcgcagttgatcgagatcgtgcgcgaacagggctga
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