Xanthomonas oryzae pv. oryzae PXO99A: PXO_03359
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Entry
PXO_03359 CDS
T00763
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xop
Xanthomonas oryzae pv. oryzae PXO99A
Pathway
xop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXO_03359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xop03019
]
PXO_03359
Enzymes [BR:
xop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PXO_03359
Messenger RNA biogenesis [BR:
xop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PXO_03359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
DUF594
CMS1
P-loop_SecA
PRAI
Motif
Other DBs
NCBI-ProteinID:
ACD56796
UniProt:
A0A0K0GFM1
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All DBs
Position
complement(126185..127402)
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AA seq
405 aa
AA seq
DB search
MRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQAPEQVPRVLGGLILV
PTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLLDLV
THNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVLVSATFPPAIASLAKR
RLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQEHAWPQLLVFVASRHTADK
VAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLAARGIDIDALPAVLNY
DLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEKRQGLRVPTSVIEGFEPSP
AEASARDAPDAAVRAADDNGGIKGKRPSKKDKLRAAAQAQTGKPG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcacgctcacgccgatccaggtcgcgatgattccgccgatgctggccgcacgcgac
ctgatcgtcaccgcgcagaccggctcgggcaagaccctggcgtatgccttgccgctgctg
cagcagcgcctgcaggcgccggaacaggtgccgcgcgtgctgggcgggctgatcctggtg
ccgacgcgtgagctggtcgcgcaggtcgcgcagaccctgctgtcgctggcagcggccttg
ccgcgacggttgaagatcgtcgccgccaccggcggtgaagccatcaatccgcaactgatg
gccttgcgcggcggcgcagatatcgtcatcgccaccccggggcggctgctggacttggtg
acgcacaatgcgctgcgcctctcgcaggtacgcacgctggtgctggacgaagccgatcgc
ctgctcgacctgggctttggcgccgagattgatcgcatcctggccctgctgccggcgcag
cggcaaagcgtgctggtctcggccaccttcccacccgccatcgcgtcgctggccaagcgt
cgcctgcgcgatccgttgcgcatcaccatcgacgccacgcccgagcacgcaccggcgatc
gcgcaacgcgccatcgcagtggatgccggtcagcgcacgcagctgctgcgtcatctgctg
caggaacacgcctggccgcagctgctggtgttcgtcgccagccgtcataccgccgacaag
gttgccgaaaaactgagcaagaccggcatcgaggcgttaccgctgcatggcgaactgagc
cagggccgccgcgaacgcacgctgcgcgccttcaaacaggcggacgtgcaggtgctggtg
gccaccgatctggccgcgcgcggcatcgacatcgacgccttgccggcggtgctcaactac
gatctgccccgctccaccgtcgactacacccaccgcatcggccgcaccgcgcgtgccggt
gccagcggcgaggcgatcagcttcgtcactgccgagcgcgcgcagcagtggcggctgatt
gaaaaacgccagggcctgcgtgtgccgaccagcgtgatcgaaggcttcgagccgtcgccg
gccgaggcatctgcccgcgatgcgcccgacgcagcggtgcgggcagccgatgacaacggc
ggcatcaagggcaagcggccgagcaagaaggataaattgcgtgcggcggcgcaggcgcag
actggcaagcccggctga
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