Xanthomonas oryzae pv. oryzicola BLS256: XOC_3469
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Entry
XOC_3469 CDS
T01873
Symbol
uvrA
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XOC_3469 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_3469 (uvrA)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XOC_3469 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XOC_3469 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_23
AAA_16
RsgA_GTPase
nSTAND1
AAA_25
AAA_21
nSTAND3
DnaJ_CXXCXGXG
NACHT
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
AEQ97562
UniProt:
G7TDN4
LinkDB
All DBs
Position
3570908..3573874
Genome browser
AA seq
988 aa
AA seq
DB search
MAMDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQP
RCPDHGFPLEAQTVSQMVDHMLTQDQEQRYMLLAPVIRDRKGEHAQVFEQLRAQGFVRVR
VDGELYEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGEGMVAVQSLD
DPAAAPHLFSSKYSCPVCDYSLPELEPRLFSFNAPVGACPSCDGLGVAEFFDPDRVVVHP
ELSLSAGAVRGWDRRNAYYFQLIASLAKHYKFDVDAVWNTLPAKVRQAVLFGSGDEVISF
TYFTDAGGRTTRKHPFEGILPNLERRYRETESPAVREELTKYVSQQPCPACDGTRLNRAA
RNVFVADRPLPELVVLPVNEALSFFRGLSLPGWRGEIAAKIVKEIGERLGFLVDVGLDYL
TLERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLG
NTVIVVEHDEDAIRLADHVLDIGPGAGVHGGEICAQGPLQDILKSPRSLTGQYLSGKRRI
EIPKQRHKPNPKMMLHLRGATGNNLKNVDLDIPAGLLTCITGVSGSGKSTLINDTLFTLA
ANEINGASHTVAPHREVENLDLFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVP
ESRARGYSPGRFSFNVRGGRCEACEGDGMIKVEMHFLPDVYVPCDVCHGKRYNRETLEIR
YKGFNISDVLQMTVEDALRLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVK
LSKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTAD
WIVDLGPEGGHRGGTILVSGTPEDVAAHKASYTGQFLAKMLPSVKARQTRPAAMANKPDA
RPPRKVKPEKVGKVATSATKKTAKKKAS
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggatttcatccgcatccgcggcgcgcggacgcacaacctcaaaaacatcgac
ctcgacctgccccgcgacaaattgatcgtgatcaccggcctgtccggctcgggcaagtcg
tcgttggcgttcgacaccatctatgcagaaggccagcgccgctacgtcgagtcgctgtcg
gcgtatgcacgccagttcctgagcgtgatggaaaagccggacctggatcatatcgaaggc
ctgtcccctgccatctcgatcgaacagaaatccacctcgcacaacccgcgttccaccgtc
ggcacgattaccgaaatctacgactacctgcgcctgctctacgcgcgcgtgggccagccg
cgctgcccggaccatggcttcccgctggaagcgcagaccgtcagccagatggtcgaccac
atgctcacccaggatcaggagcagcgttacatgctgctggccccggtgatccgcgaccgc
aagggcgagcatgcgcaagtgttcgaacaactgcgcgcgcagggtttcgtgcgcgtgcgc
gtggacggcgagctgtacgaaatcgatgcggtgccgccgttggcgctgcgccagaaacac
accatcgaggcggtgatcgaccgcttccgtccgcgcgaagacatcaagcagcgcctggcg
gaaagtttcgaaaccgcgctcaagctgggcgaaggcatggtggcggtgcaatcgttggac
gacccggcggccgcaccgcacctgttttcgtccaagtacagctgcccggtctgcgattac
tcgctgccggagttggaaccgcgactgttttcgttcaacgcacccgtgggtgcctgcccg
agttgcgatggcttgggcgtggccgagttcttcgacccggatcgtgtggtggtgcatccc
gagctgtcgctttccgctggcgcggtgcgcggctgggatcgacgcaatgcctattatttc
cagctgattgcctcgctggccaagcactacaagttcgatgtggatgcggtgtggaacaca
ctgccggccaaggtgcgccaggcggtgctgttcggcagcggcgatgaggtgatcagcttc
acctacttcaccgacgcgggcgggcgcaccacacgcaagcacccctttgaaggcatcctg
ccgaatctggaacgccgctaccgcgagaccgaatcgccggcggtgcgcgaagagctgacc
aagtacgtcagccagcagccctgcccggcctgcgacggcacgcgcttgaatcgcgctgcg
cgcaatgtgttcgtggccgatcgcccgctgccggaactggtggtactgccggtcaacgag
gcgttgagctttttccgtggcttgtcgctgccgggttggcgcggcgagattgcggccaag
atcgtcaaggagatcggcgagcggctgggcttcctggtcgatgtgggcctggactacctc
accctggagcgtaaggccgacaccttgtccggcggcgaagcgcaacgcattcgcttggcc
agccagatcggcgccggcctggtcggggtgatgtatgtgctggacgagccgtcgatcggc
ctgcatcagcgcgataacgaacgcctgctcggcacgctgacgcggctgcgcgacctgggt
aacaccgtgatcgtggtcgagcatgacgaagacgcgatccgcctggccgaccatgtgctg
gatatcggtcccggtgccggcgtgcatggcggcgaaatctgcgcgcaaggcccgctgcag
gacattctgaaatcgccgcgctcgctgaccggccaatatctgtcgggcaagcgccgcatc
gagattcccaagcagcgccacaagcccaacccgaagatgatgctgcatctgcgcggagca
accggcaacaacctcaagaacgtcgacctggacattccggccgggctgctgacctgcatc
accggcgtgtccggttcgggcaaatcgacgctgatcaacgataccttgttcacgctggcg
gccaacgagatcaacggcgcgtcgcacaccgtggcaccgcatcgcgaagtcgaaaatctg
gacctgttcgacaaggtcgtggatatcgaccagtcgccgatcggacgcacgccgcgctcc
aacccggcgacctacaccggcatgttcacgccgttgcgcgagctgtttgcgcaggtacca
gagtcgcgtgcacgcggttattcgccaggccgtttcagcttcaacgtgcgtggcggccgc
tgcgaggcctgcgagggcgacggcatgatcaaggtggagatgcacttcctgcccgacgtc
tacgtgccttgcgatgtctgccacggcaagcgctataaccgcgaaacgctggaaatccgc
tacaagggtttcaacatcagcgacgtgctgcagatgaccgtggaagatgcgctgcgcctg
ttcgagccagtgccgtcgatcgcgcgcaagctggaaacgctggtcgatgtgggactgagc
tacatcaagctgggccagagcgcgaccacgctgtccggcggtgaagcgcagcgcgtcaag
ctgtccaaggaactgtcgcgtcgcgataccgggcgcaccttgtacatcctggacgaaccg
accaccggcctgcacttccacgatatcgaagccttgctcggcgtgttgcacaagctgcgc
gacgaaggcaacacggtggtggtgatcgaacacaatctggacgtgatcaagaccgccgac
tggatcgtggatctgggtccggagggtggccatcgcggcggcaccatcctggtctccggt
acgccggaagatgtggctgcacacaaggcgtcctacaccgggcagttcctggccaagatg
ttgccgtcggtaaaagcgcgccagacgcgtccggcggcaatggccaacaagcccgatgcg
cgccctccgcgcaaggtcaaaccggagaaggtgggcaaggtcgccacatccgccaccaag
aagactgcaaagaagaaggcaagctga
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