Xanthomonas oryzae pv. oryzae PXO86: AZ54_01570
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Entry
AZ54_01570 CDS
T03765
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AZ54_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xoy03400
]
AZ54_01570
Enzymes [BR:
xoy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AZ54_01570
DNA repair and recombination proteins [BR:
xoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AZ54_01570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJQ81484
LinkDB
All DBs
Position
328321..332394
Genome browser
AA seq
1357 aa
AA seq
DB search
MSISHVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGVRIGQILAVTFTEAA
TQELRRRIRERLVLAASLVPDAPVGAALAASESPAIQLPGATSASVAAAQTATDLADDPS
RPGPLLHEAPDALLTRAILVTHLTGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVL
REHALESGQAFAAPELLANDRQLLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDL
RALVRHPTLLPAVATTTDDAAALLQAVHVASDALAAAFQAHGTAFFDAIMSAIDGRILSK
VSYKPEWLASLWHWFESFAAAPSLNTVPHAKLRKLTAAELAAGTNQKFVDRTPASPMSHE
IDGYLTALARVQAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGA
QADALVARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAAGLEPALFLIGDPKQA
IYGFRGGDVRTYLAAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFLTDGIAFH
PVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSAGRARELA
TAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVAAG
KQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERHRRWQQ
QALDWRERWQRGGPLALIGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADARALGPH
GLVDWLLRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKG
AGRHCVVHAPDSGRQLHWKMDRDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIA
SGPFHQHERTALAGMLRALDALQGAAGEGAVVVDTSTPPAHLPRLPPPREAQVPPARNPQ
RHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVGTDAEPFDP
RFAGNRFGVVMHDVFERCDFAAWQVWRPGQPAPDGQAAPILEALQRGGYAQDELDDGLAM
LTALIGHTLTVALPEGRLADVPEPQRRNEMEFHFAMRPTRVEALLALLHRFGVVGDRQAF
GARQRLEGLMTGLIDLTYTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYALQALIYTV
ALHRWLRFRLGEAYDYARDFGGVRYLFCRGLDAGRHAVVVAAASESESVVETVGNSIAGQ
RLPDSTRDSTLDRPAPAPNSGATTAGLARAPLGDPAPGIHAWRFEPALVQALDALFAGKP
SDALSNDTLEQGSANGLKPLSPRERGEGTSTPGTPTP
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcagccacgtcaccgacccgtacctgcagttgccgctgcacggcgtgcgcctg
atcgaagccagcgccggcaccggcaagacctttacgctggccaccttgtttacccggctg
gtggtcgagcgcggcgtgcgcatcggccagattctcgcagtgaccttcaccgaagcggcc
acgcaggaactgcgccgtcgtatccgcgaacgcctggtgctggctgcaagcttggtgccg
gatgcgcctgtaggagcggccctggccgcgagcgaatcacccgcaatccagctgcctggc
gcaacatcggcttctgtagcagcggcccagaccgcgaccgacctcgccgacgatccatcg
cggccagggccgctcctccacgaagcgcccgacgcattactcacccgcgccatcctggtc
acgcatctgaccggcggcagcgaaacacccgccgccttgcgccgccgtttgcagcaggcg
gtggaagagatcgatctggccgcggtgttcaccatccacggcttctgcgcgcgcgtgctg
cgcgaacacgcgctggaaagcggccaggcgttcgccgcgccggaactgctcgccaacgac
cgccaattgctcggcgaagtcgcggccgatctgtggcgacaacgcgccgccgacgcggca
atggccgaagacctcatcgcgctgtggtcgggcggccccgaggccttggccagcgatctg
cgcgccctggtgcggcatccaacgctgttgccggcggtcgccacaaccaccgacgatgcg
gccgccttgctgcaggccgtgcacgtggccagcgacgcattggccgccgcattccaggcg
cacggcaccgcatttttcgacgccatcatgtcggccatcgacggccgcattctgagcaag
gtcagctacaaacccgagtggttggcatcgttgtggcactggttcgaaagcttcgccgct
gcgccatcgctcaatacggtgccgcatgccaagttgcgcaagttgaccgctgcggaactg
gccgccggcaccaaccagaaatttgtcgatcgcacgccggcttcgccgatgagccatgag
atcgatggctatctcactgcgctggcgcgtgtccaagcatggcgcagccgtcgccgcatc
gccctgctgcacgcactgcgcgacgacgccatcgcacggctcgcgctgctcaagcggcaa
cgccgcgtgcagacctacgacgacctggtcgatggtgtcgcgcacgcattgcaaggcgca
caggccgatgcgttggtcgcacgtctgcgcacgcaatacgccatcgcgctggtggacgaa
ttccaggacaccgacgaccgccaatggtcgatcttttccaacgtgttcggcgaaggcccg
ctggcacacgccgctgggctggaaccggcgctgtttctgatcggcgaccccaagcaggcc
atctacggcttccgtggcggcgatgtacgcacctatctggccgccgcagtcactgccgaa
ccggcgccaccgctgagccacaacttccgctcgcgccccggcgtgctggcggccatcgac
gcgctgtacgcgcaggccggctacagcgatgccttcctcaccgatggcatcgccttccat
ccggtgcaggccggcaccaaacgcgtggatgccgacctgcaacgcgacggcgccactgct
cctgcgttgacgctgtggcgcgcgccggaaccgccgccgccatctgacgcggcagcggcg
aaaaccaagcaagcaggcaagcccaagccctggagcgccggccgcgcacgtgagctggcc
accgccgcctgcgtcgcggcgatccgcggctggttggccggtggccgcgacggcactgcc
accatcaacgcgcgcccggtgcaggccggcgatatcgccgtgctggtgcgcagccacggc
gaggccacgcgtatccagcaggcgctcggcgcggtgggcattccggccgtcgcggccggc
aaacaaagcttgttcgccaccgacgaagccttggaattgctcgcactgctgcaggccttg
ctcgacccgggcgatgacagccgcctgcgcgccgccttggccacggtgttgatcggcgaa
gacgccatcgccatcgccgcacttgaacgcgacggcgagcgacaccgccgctggcagcag
caggcgctggactggcgcgaacgctggcagcgtggcggcccgctcgccttgatcggcgac
ctcggcgccacgcacgggcaacgcctgcttgccttggtcgatggcgagcgccgcctcacc
aactatctgcagctggccgaactgctgcaggaagccgacgcccgcgcgctcggcccgcat
ggcctggtcgactggctgttgcggcgcatcgccaatgccgacgacaacgatgacgcccag
caattgcggctggaatcggacgcgcgccgcgtgcagatcgtcactctgcacaagagcaag
ggcctggaatatccgctggtgtttttgccgtatatcggcatcggccgcagcgacaaaggt
gccggccgccattgcgtggtgcatgcgccggacagtggccgtcagctgcattggaaaatg
gatcgggacgacccgacctggagcgccgccgaagccgcctggaagcaggaacaacgtgcc
gaagacgcgcggctgctctatgtcggcctgacccgtgccgagcacgcgttgtggatcgcc
agcggcccgttccatcagcacgaacgcaccgcactggccggcatgttgcgcgcgctcgac
gctttgcagggcgccgcaggcgagggcgcggtggtggtcgacacgtccacgccgcccgcc
cacctgccgcggctgccgccaccgcgcgaggcgcaggtgccgcccgcccgcaatccgcag
cggcatatcgccccggaatggtgggtctacagcttcacccagctggccaatgccgatgcc
ggcgccgccaccgacccgatggccagcgccaccgtcgtcggtagcggcggcagcgacgaa
ccgtccggcagcgaagcggtcgccgtggccgtgggcaccgacgccgaaccgttcgatcca
cgctttgccggcaaccgcttcggcgtggtgatgcacgacgtgttcgaacgctgcgacttc
gccgcctggcaggtctggcgaccgggccaacccgcacccgacggccaggccgcgcccatc
cttgaggcgctgcaacgcggcggctacgcccaggacgaactcgacgacggcctggccatg
ctgaccgcactgatcggccacaccctcaccgtggccttgcccgaaggccgcctggccgac
gtgcccgaaccgcagcgccgcaacgaaatggaattccatttcgccatgcggcccacccgc
gtcgaggcgctgctcgcactgctgcatcgcttcggcgtggtcggcgaccgccaggccttc
ggcgcgcgtcagcggctggaaggcctgatgaccggcctgatcgacctcacctacaccgtg
gacgggcgctggtatgtgctcgactacaaatccaaccgcctgcccagctacgacgccgat
gccctggcccgcgccatggcgcatagcgagtacgcgttgcaggcgctgatctacaccgtg
gccctgcaccgctggttgcgtttccgcctgggcgaggcctacgactacgcccgcgacttc
ggcggcgtgcgctatctgttctgtcgcggcctggatgccggacgtcatgcggtggtggtg
gctgccgcatccgaatccgaatccgttgtcgaaaccgtcggcaattccatcgcaggccag
cgcctgcccgactccacccgcgactccacactggacagacccgcccccgccccgaactcc
ggcgccacgaccgctggcctcgcgcgcgcgcccttgggcgatccggcgcccggcatccac
gcctggcgtttcgaaccagcgctcgtgcaagccctggacgccttgttcgccggcaagccg
tcagatgcgctgtccaatgacacgctagagcaaggctcggccaacggccttaagcccctc
tccccccgggagaggggtgagggtacgtccacaccagggacgcccactccatga
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