Xanthomonas perforans: BJD13_08785
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Entry
BJD13_08785 CDS
T04778
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD13_08785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_08785
03016 Transfer RNA biogenesis [BR:
xpe03016
]
BJD13_08785
Enzymes [BR:
xpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BJD13_08785
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJD13_08785
Transfer RNA biogenesis [BR:
xpe03016
]
Prokaryotic type
tRNA degradation factors
BJD13_08785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_20
HTH_11
RNase_II_C_S1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
APO99160
UniProt:
A0A0G8VTA9
LinkDB
All DBs
Position
complement(1620863..1623391)
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AA seq
842 aa
AA seq
DB search
MTKKKTPDSDRPSRRKSTGAGDSSTAEQQKLPGWMPDFLVRAAAGASTKSANKRAADKAS
NPSKASSQPAAAPPAPRAPHPRKSGPSAPPPERFQTTAPATAEFKDPHAEREALRYAEPI
ASREAILQLLEACDGPQTAEEIAEQLNLSDRIDALGKRLAAMVREAQLVQNRRGGYAPVQ
QTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGA
IARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDGIGEAREGQLVVCELIAPP
DARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGGR
VDLRQMPLVTIDGEDAKDFDDAVYCEPNVDGFRLVVAIADVSNYVRPGTPLDDEAQKRAT
SVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRDGEVTGSRFYEAVMNSHARL
TYNQVWKAVGEDDADTKAFIGPLLPQVQRLHQLYHVLSKARTQRGAIEFETSEVRFVLDN
TGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSVHVPAPYRVHERPPESKYEDLLEF
LKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPENNGHFGLAL
EAYAHFTSPIRRYPDLLVHRAIKHALTGASPQTFIYTPRQMAALALQCSERGRRADEAER
EVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIR
KTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLADENGAAPEAPLPPREKPTKRKKK
PY
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaaaaccccagattccgatcggccgagtcgccgcaaatccaccggcgca
ggcgattccagcactgccgaacaacagaagttgccgggctggatgccagacttcctggtc
cgcgccgcagccggcgcatcgaccaagtccgccaacaagcgcgctgccgacaaagcatcc
aacccctccaaagcctcgtcacagccggcggccgcgccgcctgcgccgcgcgctccgcat
ccgcgcaagagtgggccgtctgcgccgccgccggaacgcttccagaccaccgcgcctgcg
actgccgaattcaaggatccgcatgccgagcgcgaggctcttcggtatgccgagccgatc
gccagccgcgaggccatcctgcaattgcttgaagcctgcgacggtccgcagaccgccgaa
gaaattgccgagcagctcaatctgagcgaccgcatcgatgcgctgggcaagcgcctggcc
gcaatggtgcgcgaagcgcaactggtgcagaaccgccgcggtggctacgcgccggtgcag
cagaccagcctgatcgccggcgtggtcatcgccaatccggagggcttcggtttcctcaag
cccgacgagggcggcgacgacctgttcctgccgccgttcgaaatgcgcaaggtcatgcat
ggcgaccgcgcgctcgccaatgtcaccggcatcgaccgtcgcggccgtcgcgaaggtgcc
attgcacgcgtgctcgagcgtggcatgtcgcgcatgctggggcgctttttctatgagcac
ggtgtggcttacgtcgaccccgacgacaagcgcatccagcgcaatgtgcagattgccccg
gacggtatcggcgaggcacgcgaaggccaattggtggtctgcgaactgatcgcgccgccg
gacgcgcgccgcccggcgatcggcaagatcatcgcggtactgggcgacaagctgacgccg
tcgctggtcgtcgaaatggccatccacggccatgaattgccgcacgaatttccgcaggaa
gtgctggacgaagcggcggccgtgccgttggtggtcgagccgcagatgatcggcgggcgc
gtggacctgcggcagatgccactggtcaccatcgatggcgaagacgccaaggatttcgac
gacgcggtgtattgcgaacccaatgtcgacggcttccgtctggtggtggcaatcgccgat
gtgtccaattacgtgcgtcccgggacgccgctggacgacgaagcgcaaaagcgcgccacc
tcggtgtatttccccggcttcgtggtgccgatgctgccggaaacgctgtccaacggtatc
tgctcgctgatgcccaaggtcgaccgcatgtgtttcgtctgcgacatgcaggtgggacgc
gatggtgaagtgaccggctcgcgtttctacgaagcggtgatgaattcgcacgcacgcctg
acctataaccaggtctggaaggcggtgggcgaagacgatgcggacaccaaggccttcatc
ggcccgctgctgccgcaggtgcagcgcctgcatcagctgtatcacgtgctgtcgaaggca
cgcacgcagcgcggggcgatcgagttcgaaacctccgaagtgcgcttcgtgctcgacaac
accggcgaggtcacccaggccggcatgctggtgcgcaacgatgcccacaagctcatcgaa
gaatgcatgatcgccgccaacgtcgaggcggcgcgctacctgctgagcgtgcacgtgcct
gcgccttaccgtgtgcatgagcgcccgccggagagcaagtacgaagacctgctggagttc
ctcaaggagttccagctgagcttgccggcatggagcaaggtgcgccccggcgattacacc
aagttgctgaagaaagtgcgcgcgcgcccggatgcggcgttgctggaatcggtgttgctg
cgcagccagagcctggcggtgtattcgccggagaacaacggccatttcggtctggcgttg
gaggcatacgcgcatttcacctcgccgattcggcgttacccggatctgctggtacaccgc
gcaatcaagcatgcgttgaccggcgccagcccgcagacattcatctataccccgcgtcag
atggcggcgctggcattgcaatgctccgagcgcggacggcgtgccgatgaagccgagcgc
gaagtggacgagcgctaccgcgccgcgtggatggaaaagcacgtcggtggccagttcgat
ggcgtgatcagcggtgtgacgggatttggcctgttcgtggagttgacgcagtccaaggtc
aacggcctggtgcacgtcacgcagctgccgcaggactattaccagttcgatccgattcgc
aagacgctcagcggcgagcgccgtggtcgcgagttccgcctcggcgacccggtgcgcgtg
ctggtgctcaaggccagcatggaagagcgcaagatcgacttccgcctggccgacgaaaat
ggcgcagcgcccgaagcgccgctgccgccacgcgagaagccgaccaagcgcaagaagaag
ccgtactga
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