Xenopus tropicalis (tropical clawed frog): 100144973
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Entry
100144973 CDS
T01011
Symbol
sdc4
Name
(RefSeq) syndecan 4 precursor
KO
K16338
syndecan 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04512
ECM-receptor interaction
xtr04514
Cell adhesion molecules
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100144973 (sdc4)
04514 Cell adhesion molecules
100144973 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100144973 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xtr00535
]
100144973 (sdc4)
Proteoglycans [BR:
xtr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
100144973 (sdc4)
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Ortholog
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Gene cluster
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Motif
Pfam:
Syndecan
EssA
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
100144973
NCBI-ProteinID:
NP_001120011
Xenbase:
XB-GENE-5727116
UniProt:
B0BM67
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Position
10:complement(12811753..12832920)
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AA seq
204 aa
AA seq
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MNQILLVIALVLSAVAAESIRETETMDPTSMLEYESSGSFPEGDFDDDEEDDYDIDSESD
NDEDYSGSGEHETDDIDVNEDNDDDDDEEYDEETTTLGNQIPEHVDIAKGGTKHNTYSEN
NEVDNDIRYPTKPKNLEPSNEISMASTGSAGFFQRTEVIAAIIAGTLVGLVVAVSFIVFL
VIRRNQNGDLVKKPIYKKTSTMEV
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagatcctgctggttatcgccctggtgctgtccgcagtcgcagccgagtcgata
agggagactgaaacaatggaccccacgagtatgcttgagtatgaatcgtctggctctttc
cctgaaggggactttgatgatgacgaagaagacgactatgatatcgactccgaatcggac
aacgatgaagattactccggttcaggagaacacgaaactgatgatattgacgtcaatgaa
gacaatgatgatgatgatgatgaagaatatgatgaggaaacaacaactttgggcaaccaa
attcctgaacacgttgacatagccaaaggcggcacaaaacataacacctacagcgaaaac
aacgaagtcgacaatgacattcggtacccaactaagcccaaaaacttggagccatccaat
gaaatctccatggccagcactggctctgctggatttttccaaagaacagaagttattgct
gcaatcattgccggcacgttggttggcctggtcgtcgcagtctccttcattgtattccta
gtaataaggagaaaccaaaacggggatctggtcaagaaacccatctacaagaaaacttca
acaatggaagtatag
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