Xenopus tropicalis (tropical clawed frog): 100145010
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Entry
100145010 CDS
T01011
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100145010 (upf3b)
03015 mRNA surveillance pathway
100145010 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100145010 (upf3b)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100145010 (upf3b)
mRNA cycle factors
P-body specific factors
100145010 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
100145010
NCBI-ProteinID:
XP_002940330
Xenbase:
XB-GENE-994258
UniProt:
A0A8J0QRY8
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All DBs
Position
8:59726692..59735866
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AA seq
508 aa
AA seq
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MKEDKENTKPKERKGEQEAGEEGEKSEKLKEKKEVLSKVVIRRLPPSLTKEQLEEHLQPL
PDHDYFEFFSNDSSLFPHMFSRAYINFKSQDDIVLFRDRFDGYVFIDHRGQEYPAIVEFA
PFQKVAKKKSKKKDSKIGTIEDDPEYKKFLDSYTLDEEKLTSTPETLLEEIEAKNKEMIA
KKTTPLLSFLKNRQRLRDEKREERRRRELERKRLREEERRKWKEDERRKKKEAEKQKKYE
KPSEKELEQSKDEPKIKLLKKPEKEEERDTDKKFKTRKFEKENIKEDRCATGKKSDGEVG
EEKTKKVEVEYVKDYRDKDYRDKDYREKDYREKDYRDKDYRDKDYRDKEYRDKDYRDKEY
RDKDYREKDYRDKEYDRERRQRDKEKSRYHEDDRRKPRDRYEKDRCFRRREEDYRKERDL
VKEKTRKQDVTESPQSTDKSERIAREEKKEDSAKRDRIRNKDRPAMQLYQPGARSRSRLT
QCDESPAKTGEQNAEKKVGDNNKVKEGE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaataccaaacccaaggagagaaaaggggaacaagaagccggg
gaggaaggggagaagtcagagaagctgaaggaaaagaaagaagttctgagtaaggtggtc
attcgtcgcttgcctcctagtctaaccaaagagcaactggaggagcaccttcagcctttg
ccggaccatgactattttgagtttttttccaacgactctagtttgtttcctcacatgttc
tcaagggcatacataaacttcaaaagtcaagatgacattgtgttatttagagatcgtttt
gatggatatgtgtttattgatcacagaggtcaggaatatcctgctattgtggaatttgct
ccttttcaaaaagttgcaaaaaagaaaagcaagaaaaaggattcaaaaattggaaccatt
gaggatgatccagaatacaaaaagtttcttgactcttacactttggatgaagagaaacta
acatcaactccagagacattgctagaagaaatagaggcaaagaataaagaaatgatagca
aagaagactacacctctgttaagtttcttaaaaaacagacagagacttagagatgaaaaa
cgtgaagaaaggagaaggcgagaactggaacgaaaaagactgcgagaagaagaaaggaga
aagtggaaagaggatgaaagaagaaaaaagaaagaagcagaaaagcaaaagaaatatgaa
aaaccttcagagaaagagctggaacagtcaaaggatgagccaaaaattaagcttcttaaa
aaacctgagaaagaagaagagagagatacagacaaaaagtttaagacaagaaaatttgaa
aaagagaatattaaggaagaccgatgcgctacaggaaagaaatcggatggtgaagtcggg
gaggagaaaacaaaaaaggttgaagtggaatatgtaaaggattacagggataaagattac
agagataaagactaccgggaaaaagattatagagagaaagattatagggataaggactac
agagacaaagactatcgcgataaggaatacagagacaaagattacagagataaggaatac
agagacaaagactatcgtgaaaaggactacagggataaggaatacgacagagagaggcga
caaagagataaggagaaatcaagatatcatgaggatgatcgccgtaagcctagagatcga
tacgagaaagacaggtgtttcaggcggagagaagaggactataggaaggaacgggatttg
gtaaaagagaaaacaagaaagcaagacgtgacagagagtcctcagagcacagataaatct
gagagaatagctcgtgaggagaagaaggaagatagtgccaaaagggatcgaatcagaaac
aaggatcggcctgcaatgcagttataccagcctggagctagaagcaggagccggctaaca
cagtgtgatgaaagcccagccaagacaggagagcaaaatgcagagaaaaaagttggtgac
aacaataaggtgaaagaaggagagtag
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