Xenopus tropicalis (tropical clawed frog): 100271763
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Entry
100271763 CDS
T01011
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
xtr03410
Base excision repair
xtr03420
Nucleotide excision repair
xtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100271763 (lig1)
03410 Base excision repair
100271763 (lig1)
03420 Nucleotide excision repair
100271763 (lig1)
03430 Mismatch repair
100271763 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtr03032
]
100271763 (lig1)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100271763 (lig1)
Enzymes [BR:
xtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100271763 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
100271763 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100271763 (lig1)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100271763 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100271763 (lig1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100271763 (lig1)
NER (nucleotide excision repair)
Other NER factors
100271763 (lig1)
MMR (mismatch excision repair)
Other MMR factors
100271763 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
DDR
Motif
Other DBs
NCBI-GeneID:
100271763
NCBI-ProteinID:
XP_002941929
Xenbase:
XB-GENE-1009779
UniProt:
A0A8J0QYK6
LinkDB
All DBs
Position
7:103528658..103553487
Genome browser
AA seq
1040 aa
AA seq
DB search
MQRTIKSFFQPKLGAEVKKKEENVKHDDTKKEKVEEPEKSVNTERPLKERNGSALCDDAE
SPVKKVSKKSARVLESDSEEEEENSKVQATPEKMNNDSVPKNDAVEETPQRAHKETKVEG
TSEMNTSQDFTSPCSSKSIDSPLCSDSPGISPSGIPKRKTARKQLPKRKLENSPSESNPP
TEDVKVQGAVKRQRKEAEGNVQQEEPMETGHNISMEEECSIKKEANAEVVQEEKSKVDDQ
NVELLDQKDDVSGREQSEPKDKELQPKSTSPNSKPKTPKAKSGKKHSPLQKKVKFSDKVS
SKDDSEGKSSEEKSDEEPEKKADPAKPVKQISSFFAPKKPAIKTEKKEEIMNEKNASETS
LEASPKPKKTVSSFFGAIKPEPSEDQAVYNPSKSSYHPINDACWSNGQKVPYLAVARTFE
RIEEESARLKNIETLSNFLRSVIALTPGDLLPCIYLCLNRLGPAYEGLELGIGETILMKA
VAQATGRQLEKIKSEAQEKGDLGLVAESSRSNQRTMFTPPKLMASGVFSKLKDIARMTGN
ASMNKKIDIIKGLFVACRHSEARYIARSLGGKLRIGLAEQSVLSAIAQAVCLTPPGHDAP
PTVMDAGKGMSTDARKSWIEDKAMILKQTFCELPNYDAIIPILLEHGIDDLPKHCRLTPG
IPLKPMLAHPTKGIGEVLKRFDEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTK
YPDIISRIPKIKKESVKSCILDTEAVAWDPEKKQIQPFQVLTTRKRKDVDASEIKVQVCV
YAFDMLYLNGESLVKEPFAKRRQLLRDSFLETEGEFMFATYMDTSNTDEISEFLDQSIKD
SCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGG
FLLASYDEESEEYQTICKIGTGFTDEDLEKHYNYLKDHVIDSPRSYYRWDSATEPDHWFD
PVQVWEVKCADLSISPVHKAALGLVEDEKGISLRFPRFLRIRDDKKPEEATNSFQVADLY
RKQQQIQNTTTTEKGEEDFY
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaacaatcaagtccttttttcagcccaaacttggggctgaagtaaagaaaaag
gaagagaatgtgaagcatgatgatactaaaaaagaaaaggtcgaagagccagagaaaagt
gttaatactgaacgtcctctaaaagagagaaatggcagtgctttgtgtgatgatgccgaa
tcacccgtcaaaaaagtttcaaagaagtctgcacgtgtgttggaaagtgatagtgaagag
gaagaggaaaactcaaaggtacaagcgactcctgaaaaaatgaacaatgatagtgtacca
aagaatgatgcagttgaagaaactcctcagagagcacataaggaaacaaaagttgaagga
acttcagagatgaacacttcacaagattttacttctccttgcagcagcaaatctattgac
agccctttatgttcagattctcctggcatatctccatctggtatccccaaaagaaagaca
gcccggaaacaactaccaaaacgtaagctggaaaattctcccagtgaatcaaatccaccc
acagaggatgtaaaagttcaaggagcagtgaagcgccaaaggaaagaggcagagggaaat
gttcaacaagaagaacccatggagacaggtcacaatatctccatggaagaggaatgctcc
ataaagaaagaggcaaatgctgaagtggttcaagaagaaaaatccaaagtggatgatcag
aatgtggaacttttagaccaaaaggatgatgtttcaggaagagaacaatctgagcctaaa
gataaagaactgcagcctaaatctaccagtcctaattccaagccaaaaacgccaaaggca
aagtcaggaaagaaacacagtccattgcaaaagaaagtgaaatttagcgataaggtatct
tcaaaagatgacagtgaaggaaaaagtagcgaggaaaaaagtgatgaggagcccgagaag
aaagcagatcctgctaaacccgtgaaacaaataagcagcttctttgccccaaagaaacct
gcaataaagacagaaaaaaaagaggaaattatgaatgaaaagaatgcaagtgagacctct
ttggaagcatcccccaaacctaaaaagacagttagcagtttctttggagcaataaagcca
gaaccatcagaagaccaggcagtgtataacccatccaagagtagttatcaccccataaat
gatgcttgctggtctaatggacagaaggtgccataccttgctgttgcacgaacctttgag
aggatagaagaggaatctgcacgacttaagaacatagagactctcagtaattttctgcgc
tccgtcattgctctcactcctggggacctcttgccttgcatctatctttgtctgaaccgc
ttgggacctgcctatgaaggactggagctcggcataggagaaactatattgatgaaagca
gttgcccaggctacaggacgccagcttgagaaaataaagtctgaggcacaagagaaagga
gaccttggcctggttgctgaaagtagtcgtagcaaccagcgcactatgtttacaccccca
aagctcatggcatcaggtgtttttagcaagctgaaagatatagccaggatgactggcaat
gcttctatgaataaaaaaattgatattattaaaggactgtttgtagcctgcaggcattct
gaggcgcgttatattgccagatctcttggaggaaaacttcggattggtctggcagagcag
tcagtgttatcagcaattgctcaggcagtgtgcctgactcctcctgggcacgatgcccct
cctactgtgatggatgctggaaagggaatgagtacagatgccagaaaatcctggatagaa
gacaaagcaatgatcttgaaacaaactttttgtgagttgccgaactatgatgccataatt
cctatccttttggaacatggtattgatgacctcccaaaacactgccgacttactccaggg
atccctttgaaaccaatgttggcgcatccaaccaagggtattggggaagtgctaaagcga
tttgatgaagctgcctttacgtgtgaatacaagtatgatggggagcgtgcacagatacat
attctggaaaatggggaggtacatatatatagcagaaaccaagaaaacaacaccactaaa
taccctgacatcatcagcagaattcccaagattaaaaaagaaagcgtcaaatcctgtatc
ctcgatacagaggctgtagcctgggacccagaaaagaagcaaattcagccgtttcaagta
ctgactactagaaagagaaaggatgtggatgcatcagagattaaagtgcaagtttgtgtg
tatgcctttgacatgctttaccttaatggagagtccctagtgaaagagccatttgctaag
cgacgacagctcttgagggattcgttcctggagacagaaggggagtttatgtttgctacc
tatatggatacatcaaatacagatgaaatttctgagtttcttgatcagtctattaaagat
tcatgtgaaggacttatggtgaagacactggagcaagatgctacatatgaaattgcaaag
cgatctcacaattggttaaaactaaagaaggattacctggaaggtgtgggtgatacactg
gatctggttgttattggagcttacctaggaaaaggaaaaagaacgggtatttatggaggc
ttcctgcttgcgtcatatgatgaggaaagtgaagaatatcagaccatctgcaagattgga
acaggttttactgatgaagacttagaaaagcattacaactacctgaaggatcatgttatt
gacagcccacggagctactaccggtgggacagcgccacagagccggatcactggtttgat
cctgtacaagtctgggaagtgaaatgtgctgatctgtccatttctccagtacataaggca
gctcttggattggtggaggacgagaagggaatttccctgcgatttcctcgcttccttcgg
atcagagacgataagaaaccagaggaggccacaaacagttttcaggtagcagatctttat
agaaagcagcaacaaatccaaaacacaactacaacagagaagggagaagaggatttctac
tag
DBGET
integrated database retrieval system
