KEGG   Xenopus tropicalis (western clawed frog): 100271763Help
Entry
100271763         CDS       T01011                                 

Gene name
lig1, ligI
Definition
(RefSeq) ligase I, DNA, ATP-dependent
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xtr  Xenopus tropicalis (western clawed frog)
Pathway
xtr03030  DNA replication
xtr03410  Base excision repair
xtr03420  Nucleotide excision repair
xtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xtr00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    100271763 (lig1)
   03410 Base excision repair
    100271763 (lig1)
   03420 Nucleotide excision repair
    100271763 (lig1)
   03430 Mismatch repair
    100271763 (lig1)
Enzymes [BR:xtr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100271763 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     100271763 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100271763 (lig1)
DNA replication proteins [BR:xtr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100271763 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100271763 (lig1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100271763 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     100271763 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     100271763 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme DDR
Motif
Other DBs
NCBI-GeneID: 100271763
NCBI-ProteinID: XP_002941929
Xenbase: XB-GENE-1009779
LinkDB All DBs
Position
7
AA seq 1040 aa AA seqDB search
MQRTIKSFFQPKLGAEVKKKEENVKHDDTKKEKVEEPEKSVNTERPLKERNGSALCDDAE
SPVKKVSKKSARVLESDSEEEEENSKVQATPEKMNNDSVPKNDAVEETPQRAHKETKVEG
TSEMNTSQDFTSPCSSKSIDSPLCSDSPGISPSGIPKRKTARKQLPKRKLENSPSESNPP
TEDVKVQGAVKRQRKEAEGNVQQEEPMETGHNISMEEECSIKKEANAEVVQEEKSKVDDQ
NVELLDQKDDVSGREQSEPKDKELQPKSTSPNSKPKTPKAKSGKKHSPLQKKVKFSDKVS
SKDDSEGKSSEEKSDEEPEKKADPAKPVKQISSFFAPKKPAIKTEKKEEIMNEKNASETS
LEASPKPKKTVSSFFGAIKPEPSEDQAVYNPSKSSYHPINDACWSNGQKVPYLAVARTFE
RIEEESARLKNIETLSNFLRSVIALTPGDLLPCIYLCLNRLGPAYEGLELGIGETILMKA
VAQATGRQLEKIKSEAQEKGDLGLVAESSRSNQRTMFTPPKLMASGVFSKLKDIARMTGN
ASMNKKIDIIKGLFVACRHSEARYIARSLGGKLRIGLAEQSVLSAIAQAVCLTPPGHDAP
PTVMDAGKGMSTDARKSWIEDKAMILKQTFCELPNYDAIIPILLEHGIDDLPKHCRLTPG
IPLKPMLAHPTKGIGEVLKRFDEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTK
YPDIISRIPKIKKESVKSCILDTEAVAWDPEKKQIQPFQVLTTRKRKDVDASEIKVQVCV
YAFDMLYLNGESLVKEPFAKRRQLLRDSFLETEGEFMFATYMDTSNTDEISEFLDQSIKD
SCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGG
FLLASYDEESEEYQTICKIGTGFTDEDLEKHYNYLKDHVIDSPRSYYRWDSATEPDHWFD
PVQVWEVKCADLSISPVHKAALGLVEDEKGISLRFPRFLRIRDDKKPEEATNSFQVADLY
RKQQQIQNTTTTEKGEEDFY
NT seq 3123 nt NT seq  +upstreamnt  +downstreamnt
atgcaacgaacaatcaagtccttttttcagcccaaacttggggctgaagtaaagaaaaag
gaagagaatgtgaagcatgatgatactaaaaaagaaaaggtcgaagagccagagaaaagt
gttaatactgaacgtcctctaaaagagagaaatggcagtgctttgtgtgatgatgccgaa
tcacccgtcaaaaaagtttcaaagaagtctgcacgtgtgttggaaagtgatagtgaagag
gaagaggaaaactcaaaggtacaagcgactcctgaaaaaatgaacaatgatagtgtacca
aagaatgatgcagttgaagaaactcctcagagagcacataaggaaacaaaagttgaagga
acttcagagatgaacacttcacaagattttacttctccttgcagcagcaaatctattgac
agccctttatgttcagattctcctggcatatctccatctggtatccccaaaagaaagaca
gcccggaaacaactaccaaaacgtaagctggaaaattctcccagtgaatcaaatccaccc
acagaggatgtaaaagttcaaggagcagtgaagcgccaaaggaaagaggcagagggaaat
gttcaacaagaagaacccatggagacaggtcacaatatctccatggaagaggaatgctcc
ataaagaaagaggcaaatgctgaagtggttcaagaagaaaaatccaaagtggatgatcag
aatgtggaacttttagaccaaaaggatgatgtttcaggaagagaacaatctgagcctaaa
gataaagaactgcagcctaaatctaccagtcctaattccaagccaaaaacgccaaaggca
aagtcaggaaagaaacacagtccattgcaaaagaaagtgaaatttagcgataaggtatct
tcaaaagatgacagtgaaggaaaaagtagcgaggaaaaaagtgatgaggagcccgagaag
aaagcagatcctgctaaacccgtgaaacaaataagcagcttctttgccccaaagaaacct
gcaataaagacagaaaaaaaagaggaaattatgaatgaaaagaatgcaagtgagacctct
ttggaagcatcccccaaacctaaaaagacagttagcagtttctttggagcaataaagcca
gaaccatcagaagaccaggcagtgtataacccatccaagagtagttatcaccccataaat
gatgcttgctggtctaatggacagaaggtgccataccttgctgttgcacgaacctttgag
aggatagaagaggaatctgcacgacttaagaacatagagactctcagtaattttctgcgc
tccgtcattgctctcactcctggggacctcttgccttgcatctatctttgtctgaaccgc
ttgggacctgcctatgaaggactggagctcggcataggagaaactatattgatgaaagca
gttgcccaggctacaggacgccagcttgagaaaataaagtctgaggcacaagagaaagga
gaccttggcctggttgctgaaagtagtcgtagcaaccagcgcactatgtttacaccccca
aagctcatggcatcaggtgtttttagcaagctgaaagatatagccaggatgactggcaat
gcttctatgaataaaaaaattgatattattaaaggactgtttgtagcctgcaggcattct
gaggcacgttatattgccagatctcttggaggaaaacttcggattggtctggcagagcag
tcagtgttatcagcaattgctcaggcagtgtgcctgactcctcctgggcacgatgcccct
cctactgtgatggatgctggaaagggaatgagtacagatgccagaaaatcctggatagaa
gacaaagcaatgatcttgaaacaaactttttgtgagttgccgaactatgatgccataatt
cctatccttttggaacatggtattgatgacctcccaaaacactgccgacttactccaggg
atccctttgaaaccaatgttggcgcatccaaccaagggtattggggaagtgctaaagcga
tttgatgaagctgcctttacgtgtgaatacaagtatgatggggagcgtgcacagatacat
attctggaaaatggggaggtacatatatatagcagaaaccaagaaaacaacaccactaaa
taccctgacatcatcagcagaattcccaagattaaaaaagaaagcgtcaaatcctgtatc
ctcgatacagaggctgtagcctgggacccagaaaagaagcaaattcagccgtttcaagta
ctgactactagaaagagaaaggatgtggatgcatcagagattaaagtgcaagtttgtgtg
tatgcctttgacatgctttaccttaatggagagtccctagtgaaagagccatttgctaag
cgacgacagctcttgagggattcgttcctggagacagaaggggagtttatgtttgctacc
tatatggatacatcaaatacagatgaaatttctgagtttcttgatcagtctattaaagat
tcatgtgaaggacttatggtgaagacactggagcaagatgctacatatgaaattgcaaag
cgatctcacaattggttaaaactaaagaaggattacctggaaggtgtgggtgatacactg
gatctggttgttattggagcttacctaggaaaaggaaaaagaacgggtatttatggaggc
ttcctgcttgcgtcatatgatgaggaaagtgaagaatatcagaccatctgcaagattgga
acaggttttactgatgaagacttagaaaagcattacaactacctgaaggatcatgttatt
gacagcccacggagctactaccggtgggacagcgccacagagccggatcactggtttgat
cctgtacaagtctgggaagtgaaatgtgctgatctgtccatttctccagtacataaggca
gctcttggattggtggaggatgagaagggaatttccctgcgatttcctcgcttccttcgg
atcagagacgataagaaaccagaggaggccacaaacagttttcaggtagcagatctttat
agaaagcagcaacaaatccaaaacacaactacaacagagaagggagaagaggatttctac
tag

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