Xenopus tropicalis (tropical clawed frog): 548845
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Entry
548845 CDS
T01011
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
548845 (rlim)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
548845 (rlim)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
548845 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING-like
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
548845
NCBI-ProteinID:
NP_001016091
Xenbase:
XB-GENE-492020
UniProt:
Q07G42
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All DBs
Position
8:complement(47479718..47492705)
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AA seq
639 aa
AA seq
DB search
MESADSAGKGSTEQSESQRQSQMDRLDREEAFYQFVNNLNEDDYRLMRDNNLLGTPGEIT
KEELLRRLQQIKEGPPQPSTEGTRGDPVSASGDPAEDSSNGDSIIDWLNSVRQTGNTTRS
GQRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGNPSMPSLEQSSEMPGAEDMEVSSQGE
NENEPEPVAPRVAQAEVTEEAPVQRGQRRARSRSPDQRRTRARTDRSRSPLHQAVEPPIR
RAQHSSSQTVDASSTEEAEGSSRTRHHVSSQMQNSSSSNETEGSSRTRQHITARQQALGT
EGQSQSQTQTQSQSQTQTQSQTQSQSTVHLSNPESRSSSQPPQTDSSSNAETTGTGQRPP
TIVLDLQVRRVRPGDYRQRDSIANRTRSRSQTPNNTVTYESERGGFRRTFSRSERAGVRT
YVSTIRIPIRRILNTGLSETTSVAIQTMLRQIMTGFGELSYFMYNDNDTDPNNPTPVSPP
AAVPGEAQNLVSPEPPAPIVEPPEPVAPVESEEGSNVSTSSARREGRNSRGGVTFEESGS
LPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRK
LPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRESIV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagagtgctgattccgccggaaaaggtagcactgaacaatccgagtcccagcgccag
agccagatggataggctagatcgggaggaagctttttatcagtttgtaaacaacttgaat
gaggacgactaccgccttatgagagataacaacctattggggactccaggggaaattact
aaagaggaattgttgaggaggcttcagcaaatcaaagaagggccaccacagccaagtaca
gaaggaacaagaggtgatccagtctctgcaagcggggaccctgctgaggattcctccaac
ggggattccataatagactggttaaattcagtgcgacagaccgggaacacaacacgaagt
ggtcagagaggcaaccagtcctggagggctgtgagcagaacaaatccaaacagtggtgat
ttcaggtttagtttggaaatcaatgtgaatcgtacttcgggcaacccaagtatgccttca
cttgaacagtcatctgagatgcctggggctgaagatatggaagtgagcagtcaaggggag
aatgagaatgaacctgaacctgttgccccaagggtggcacaagcagaggtgacagaggaa
gcacctgtacagagggggcaaaggagagccagaagcagaagtcccgatcagcgcagaact
cgagctagaaccgatagaagcagatcccctctgcatcaagctgttgagccacctattcga
agggctcagcatagttcatcacagactgttgatgcttccagtacggaagaggcagagggt
agctctaggactaggcaccatgttagttctcaaatgcagaacagctcttcatcaaatgaa
actgagggcagctctagaactagacagcatattacagccagacaacaagctcttgggact
gaaggtcagagccagagccagacccagacccagagccagagccagacccagacccagagc
cagacccagagccagagcactgttcatctgtcaaacccagagtcaagaagctcttcccaa
cctcctcagacagactcctccagtaatgcagagactacaggtaccggtcagagacctcct
acaattgtcctagatctgcaggtaaggcgagtgcgcccaggtgactacaggcagagggac
agcatagctaaccggacacgttcacgctctcagactcccaacaacacagtcacatatgag
agtgagagaggagggtttcgtcgcactttctcgcggtctgaacgtgctggagttagaacc
tacgtaagtaccatccgaattccaattagaagaatcctgaacacggggctcagtgagacc
acatctgtggccatccagacaatgctgaggcaaataatgactggctttggggaactcagc
tacttcatgtacaatgataacgacactgatcctaacaaccccacaccagtgtcccctcct
gcagcagttcctggtgaagcacaaaaccttgtcagtccagagcccccagctcctattgtt
gagcccccagaacctgttgctccagtggaaagtgaagaaggaagcaatgtttcaacatct
tcagccaggagggagggtcgcaatagcagagggggtgtcacatttgaagaaagtggatca
ctaccttttcttagtctggctcagttcttcttgcttaatgaggatgatgatgatcagcca
aggggactcaccaaagagcaaattgataacctgtccacccgaaattttggtgaaaatgat
gccctgaaaacatgtagcgtgtgcataacagaatatacagaagggaacaagcttcgcaaa
ctgccttgttctcacgagtaccacgtccactgtattgaccgttggttgtctgaaaattct
acctgccccatctgtcgccgagcagtcctggttgcaggcaacagagagagcattgtgtaa
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integrated database retrieval system
