Xenopus tropicalis (tropical clawed frog): 733808
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Entry
733808 CDS
T01011
Symbol
col5a3
Name
(RefSeq) collagen alpha-1(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
733808 (col5a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
733808 (col5a3)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
733808 (col5a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
733808
NCBI-ProteinID:
XP_004913770
Xenbase:
XB-GENE-984985
UniProt:
A0A8J0R3F4
LinkDB
All DBs
Position
4:complement(109427247..109550283)
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AA seq
1872 aa
AA seq
DB search
MERWSTRWKTKRRLWDSSLSSLVLITLTFLYQAAEVRGAGPVDVLKSLEFHSLPEGVSKT
AGFCTNRRAAKGSDTAFRVQKHAQLSIPTKKLFPGGVFPKDFSVLLTVKPKKGLQSFLLS
IYNDQKVQQLGVEIGSSPIFQYEDHNGKPAPKDYPMFSSVNIADGKWHRVAISVEKKTVT
IIVDCKKKATLPLPRSDKPIVYTNGIVVFGTSLLEEDVFEGDIQQLLISDDSKAAYDYCE
HFMPDCDAPVPNLPQAQEPQVDEYAPEELIEYDYEYGDPDYKETELVTEAPSLTEELIAQ
TEKKKASSKSKKKPVPPKSKDKPQKVTPKNSFAAKKKKGKTDYQASARKRIGANVVDYNQ
YSEGDYSYQTDTPALTTGPNEQKPEEESLVEESIVEESIVEDPFVEEYVTGEDYESEKKL
VEETEYGVKTVSPTESEPVVGEGLGEYDIYDYKEYEEKLPNPTTQEVGPGVPAETDISET
SVTNYGGYGEKGQKGEPAVIEPGMLIEGPPGLEGPAGLSGPPGLQGPPGIAGDPGERGPP
GRAGLPGADGLPGPPGTMLMLPFRYGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPM
GLTGRSGPVGAPGAAGIKGDPGDPGPQGPRGIQGTLGSMGKSGKRGRSGADGARGMPGEP
GSKGDRGFDGLPGLPGEKGHRGDKGPHGPPGPPGEDGERGEDGEVGPRGLPGEPGERGLL
GPRGPPGPSGQPGVAGVDGPQGPKGNMGPQGEPGPAGQQGIPGPQGLPGPQGSIGPPGEK
GPQGKPGLPGLAGADGPPGHPGKEGPPGEKGALGPTGPQGPIGYPGPRGVKGADGVRGLK
GGKGEKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPSGESGPTGLAGEK
GKLGVPGLPGYPGRQGPKGSTGFPGFAGANGEKGARGVAGKPGPRGQRGPTGPRGARGPR
GPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET
GFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPS
GVTGKDGPSGLRGFPGERGLPGASGAAGLKGGEGPQGPPGPLGSPGERGAAGAAGPIGLP
GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKGEIGEP
GQKGGKGDKGEQGPPGPGGLQGPVGAPGPAGSDGEPGPRGQQGMFGQKGDEGSRGFPGPP
GPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGPVGEK
GEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPAGPKGPPGDDGPKGNPGPVGFP
GDPGPPGEPGPSGQDGVSGDKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGANGAEGRQ
GEKGAKGEAGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPM
GPPGLPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGLQGSHGTKGDIGISGPA
GPTGPPGPPGLPGPQGPKGSKGSSGPAGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKT
RRSSDDMMADAGDNNLEYADGMEEIFGSLTSLKQDIESMKFPIGSQSNPARTCKDLQLCH
PELPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCINPDKKSEGVRISSWPKENPGSWFSE
FKRGKLLSYVDIQGNAINQVQMTFLKLLSQSARQNFTYTCQQSVAWYDSVGKHYDKALRF
LGSNDEEISYDNSPYIRPLHDGCALKKGFARTVLEINTLKIDQLPIADVMISDFGDQNQK
FGFEVGPVCFLG
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtggagcacaaggtggaaaacgaaaaggaggttgtgggattcatccctcagc
tccctagttctcatcactttgactttcctttatcaagctgcagaggtcagaggagctgga
cctgttgatgtactcaaatcattagaatttcacagtttaccagaaggtgtatcgaaaaca
gcaggattttgcacaaacagaagggcagccaaaggatcagatacagcatttagagttcag
aaacatgcccagcttagcatcccaacaaagaaattattcccagggggagtattcccaaaa
gatttctcagtcctgctgacagtcaagcccaagaagggtctgcagtcgttcctcctgtcc
atttacaatgatcaaaaagtacagcaacttggagtggagattggaagttcccctatcttc
caatatgaagatcataatggaaaacctgcccctaaggattaccccatgtttagctctgtt
aacattgcagatggcaaatggcaccgtgttgcaatcagtgtggaaaagaagacagtcaca
attatcgtagactgcaagaagaaagccacattacccctcccaaggagtgataagcctata
gtgtacaccaatggaatcgttgtgtttggaaccagcttgttggaagaagacgtgtttgag
ggtgacatccagcagttattgattagtgatgactccaaagctgcatatgactactgtgaa
catttcatgccggactgtgacgctccagtccccaacctaccgcaagcccaagaaccacag
gtggatgagtatgcgcctgaagagctaatcgagtatgactatgagtatggggacccagat
tacaaggagactgagcttgtaacagaggcaccctctctgactgaagaacttatagctcag
acagagaagaagaaagccagttccaaatcgaagaagaagccagtgccccctaaatcaaag
gacaaaccccaaaaggtcacgcccaaaaactcatttgcagctaagaagaagaagggcaag
accgattaccaggcgtcagcaagaaaaagaataggggccaatgtggttgactacaatcaa
tacagtgaaggagactatagttatcagacagatactcctgcccttactacaggacccaat
gagcaaaaaccagaggaggagtctttggtggaggaatccattgtggaggaatccattgtg
gaggacccatttgtggaggagtacgtaacaggagaggactatgaatcagagaaaaagctg
gttgaggaaacagagtatggggtaaaaactgttagccccacagagtctgagccagtagta
ggagaaggtttaggagaatatgatatttatgactataaggagtatgaagagaagctcccc
aaccctaccacacaagaggtcggccctggtgtgcctgctgaaactgatatctctgaaacc
agtgtgaccaattatggtgggtatggcgagaaaggccagaaaggagagccagcagttatt
gagccgggaatgctgattgaaggcccccctggtttggagggacctgctggtctttctggt
ccacctggtttgcaaggaccccctggtattgctggagatcctggtgagagaggtccacct
ggtcgcgcagggttaccgggtgctgatgggttaccagggcctccaggcaccatgctgatg
ttaccgttccgatatggtggtgatggagaaaaaggaccaacaatctcagcccaagaagca
caggctcaggccattcttcaacaagctcggattgccatgcgtggaccaccaggcccaatg
ggacttactggaagatctggccctgtgggagcacctggagctgcaggaattaagggagac
ccaggagacccaggccctcagggtcctagaggaattcagggaacacttggatccatggga
aaatctggaaaaaggggacgctctggagctgatggagcccgtggaatgccaggagagcct
gggtccaagggtgacagaggtttcgatggtcttccaggtctccccggggagaagggacac
aggggtgacaaaggtcctcatgggccaccagggcctcctggtgaagatggagagagggga
gaagatggagaagttggaccaagagggcttcccggtgaacctggtgaaagaggactatta
ggaccaaggggaccaccaggaccttcaggacagcctggtgttgctggtgtggatggacct
caaggccccaaaggaaacatgggccctcaaggagagcctggccctgcaggtcaacaagga
attccaggcccccaaggtctccctggtccacaaggctccatcggtccacctggtgagaag
ggtccacaaggaaagcctggtttgcctggattagctggagctgacggaccccctggacat
cctggtaaagaaggccccccaggagagaagggagcattgggtcccactggtccccaaggt
ccgattggttaccctggacctcgcggtgttaagggagcagatggtgtccgaggattgaaa
ggaggcaaaggagaaaagggtgaagatggatttccaggatttaagggtgacatgggtctt
aaaggagacagaggagaagttggtcctctaggtcctcggggagaagatggcccagaaggt
ccaaagggaagatctggtccatcaggagaatctggcccaactggtcttgctggtgaaaag
ggtaaacttggagtcccaggattgcccggatacccaggtcgacagggtcccaagggttct
acaggtttccctggatttgcaggagccaacggcgagaaaggagctcggggtgtagctggc
aaaccaggtccaaggggacaacgaggtccaacgggtccacgtggtgctagaggtccaaga
ggtcctacaggaaaaccaggtcctaagggcacagcaggcaatgatggtccacctggccca
cctggtgaaagaggacctcaaggaccacagggcccagttgggttcccaggaccgaagggc
ccccctggacctcctggaaaggatggattgcctggccaccctggacagcgaggagaaaca
ggtttccaaggaaaaactgggcctcctggtcctggaggtgtagtaggtccacagggtccc
accggagaaactggtcccattggtgaaagagggcatcctggcccaccaggtccccctgga
gagcaaggtttacctggatcagccggaaaagagggtgctaagggagatcctggtccttca
ggtgtgactggaaaagatggtccctcaggtcttcgtggcttccctggtgagagaggccta
cctggagcttcgggtgctgcaggtttgaagggtggagaaggaccccagggcccacctggt
ccacttggatcaccaggtgagagaggagctgccggcgctgctggaccaattggtctgcca
ggaagaccaggacctcaaggcccaccaggaccagcaggagagaagggggctccaggagag
aaaggacctcagggaccagcaggacgtgatggaatacaaggcccagtgggacttccagga
cctgcaggtccccaaggaccacctggggaagatggtgacaagggtgaaattggagaacca
ggacagaaaggaggaaagggtgacaaaggagaacagggtcctcctggaccaggaggtcta
caaggtcctgttggagcaccaggtccagcgggttctgatggagagccaggtcctagaggt
caacagggaatgtttgggcaaaagggagatgaaggttctcgtggattcccaggtccacct
ggcccaattggtctccaaggacttcctggacccccaggtgaaaagggtgaaaatggagat
gttggtcctatgggtccacccggtccccctggtcctagaggtcctcaaggccctaatgga
gctgatggtcctcaaggtcctcctggatctattggatctgttggtccagttggtgaaaag
ggtgaaccaggagaagctggaaacccaggtcccccaggagaagctggtgttggcggtcct
aaaggtgaaaggggagagaaaggagaggctggacccccaggagctgcaggacctgctggt
cccaagggacctccaggagatgatggtcctaagggaaatcccggtcctgttggattccca
ggagatcctggtccacctggagaacctggtccaagtggacaagatggtgtttctggtgat
aaaggagaggatggagaatcaggacagcctggtccacctggtccctctggagaagctgga
ccaccaggacctccaggaaagaggggtcctcctggtgctaatggtgcagaaggaagacaa
ggagagaaaggtgcaaagggtgaggctggagcagaaggagcacctggtaagactggtcct
gttggaccacaaggacctgctgggaaaccaggacctgaaggacttagaggaattccaggg
cctgtgggagaacaaggacttccaggtgcccctgggcaggatggacctccaggtccaatg
ggtcctcccggtttaccaggtctaaaaggagatcccggtactaagggtgagaagggacat
ccaggtctaattggtctgattgggccaccaggagagcagggtgaaaagggtgatagagga
cttcccggtttacaaggttctcacggaaccaaaggagatattggtatatcaggccctgct
ggtcccacaggtccacctggaccccctggtttacccggtcctcaaggtccgaagggttca
aagggttcatctggtccagctggtcagaagggagatggtggtcttcctggacctcctggt
ccacctggccctcctggggaagtgatccaaccattacctatccagtcaccaaagaagacc
cgcagatcttcagatgatatgatggcagatgctggagacaacaacttggagtatgcagat
ggaatggaggagatttttggatccctcacttcattaaagcaagatatcgagagcatgaaa
ttccccataggaagtcagagcaacccagcaaggacatgcaaagacctgcagctctgtcac
ccagaactccctgatggtgaatactggattgatccaaaccagggctgctctggtgattca
ttcaaggtctactgcaatttcacagctggaggagagacttgtataaatccagacaagaaa
tcagaaggagtgcgcatatcatcctggcccaaagaaaaccctggctcatggttcagtgag
ttcaagagaggaaagctgctttcttatgtggacattcagggtaacgctattaaccaagta
caaatgaccttcctaaaactcctcagtcaatctgcccggcaaaacttcacctatacttgt
caacaatctgttgcttggtatgacagtgtgggcaagcactatgacaaggccctaaggttc
cttggatccaacgacgaggaaatttcttatgacaacagcccatacattagacctttgcat
gatggctgtgcgctcaagaaaggatttgcacgaacagtccttgaaattaataccctgaag
atagatcagctgcccattgcagatgtaatgatcagtgactttggggatcagaaccagaaa
tttggatttgaggtcggaccggtctgcttcttaggttga
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integrated database retrieval system
