Yersinia enterocolitica FORC_002: FORC2_3897
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Entry
FORC2_3897 CDS
T03890
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yef
Yersinia enterocolitica FORC_002
Pathway
yef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORC2_3897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yef03019
]
FORC2_3897
03400 DNA repair and recombination proteins [BR:
yef03400
]
FORC2_3897
Enzymes [BR:
yef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORC2_3897
Messenger RNA biogenesis [BR:
yef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORC2_3897
DNA repair and recombination proteins [BR:
yef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FORC2_3897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKF40044
UniProt:
A0A9P1PZH4
LinkDB
All DBs
Position
complement(4445768..4447600)
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIAL
TATADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLG
LLSQNIAMFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaatagggagttactggcagagcaggtattgcgagatact
ttcggctaccagcaattccggcccggacaacaagaaattatcaacgccactctatcaggg
caagattgtctggtagtgatgccaacgggcggtggtaaatccttgtgttatcagatcccg
gcactggtgacggatggcttaacgctggtggtctcccccttaatttctctgatgaaagat
caggttgaccaactactggcctatggcgtaggcgcggggtgcttaaactcatcacaaaca
cgcgagcagcaattggcggtgatggacggctgccgcagcggtcagattaagctgctgtac
atcgcgcctgaacggctggtgatggagagctttcttgatcaactgcaccagtggcgtcct
gcgctgttggcagtggatgaagcgcactgtatctctcaatggggtcatgatttccgcccg
gaataccgagcccttggtcagttaaagcagcgtttccctaatttaccggtgatagcactg
accgcgacggctgatgaagccacgcgcggcgatatcgtgcggttactcaatctggatcag
ccattaattcaggtcagcagctttgatcgccccaatattcgttacaccctggttgagaag
ttcaaaccgcttgatcaactgtggcgttttgttcaagaccagcgtggcaaaagtggcatt
atttactgcaatagccgggctaaggtagaagacaccaccgcgcgcctacaaagccgtggt
ttaagtgtggcggcttaccatgccgggctggacaatgagcgccgcgcacaggtgcaggaa
gcttttcagcgcgatgatttgcaagtggtggtcgccaccgtggctttcggtatggggatt
aacaaacctaacgttcgttttgtggtgcattttgatattccgcgcactatcgaatcttac
tatcaggaaacgggtcgtgctgggcgtgatggtttgcccgccgaagcgatgttgctgtat
gacccggctgatatggcgtggttgcgccgttgcctggaagagaaaccagctggtgcgcaa
caagatattgagcggcataaactcaatgcgatgggggcttttgctgaagcgcaaacctgt
cgccgattagtcttgctgaactatttcggtgaaggcaaacagcagtcatgtggtaactgt
gatatctgcctcgacccacctaagcgctacgatgggctggccgatgcgcaaaaagcgctg
tcatgtgtgtatcgggttggacagcggtttggtttggggtatatcgttgaggtgctgcgc
ggggccaataaccagcgtattcgtgaatttggtcatgacaaactgtcagtttacggcatt
ggtcgtgaacagagtcatgagcattgggtcagtgtcctacgccaactgattcatctcgga
ttactgagtcagaatattgccatgttctccgccttgcagttgaccgaggcggcacgtccg
gtattgcgcgctgaattgccactacaactggcagtgccgcgaatccagagtttgaaagtg
cgtagcagcgcgaatcaaaaatcctatggcggcaattacgatcgcaagttgttcgccaaa
ttgcgcaaattacgtaaatctatcgccgacgaaggcaatattccgccttatgtggtgttt
aacgacgcaaccttgctggagatggcggagcaaatgccaattactgccagtgaactgtta
agtgtcaatggcgtcgggcaacgtaagctggagcgctttggcgcgccgtttatggcgatg
atccgcgaccatgtagataacaacgacgattaa
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