Yersinia intermedia: CH53_1052
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Entry
CH53_1052 CDS
T03608
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yin03021
]
CH53_1052 (rapA)
Transcription machinery [BR:
yin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CH53_1052 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJJ20289
UniProt:
A0A0T9LIK6
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All DBs
Position
1198082..1200988
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPITRVMFNPGDT
ITNHEGWQLKVEEVTHENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAERILIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSSNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAENIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMSAKKTLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLIANRNEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLEHTAQAILVRWYHEGLDAFEHTCPTGRTIYDSGYQELIGYLATPSEQ
EGLDEFIHACRLQHEELKLQLEQGRDRLLEMHSNGGEHGQQLAQIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPQDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDRNGTNLAAQVEFETFNRQLNAVNRHTSSKLVNAVQQEVHAMLQQAEALVEEQAK
LLIESAKHEADDKLSTELARLEALKAVNPNIRDDEIEALEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattgggt
actgtcgttgccatcgacgtgcgcatgattaccttactgtttcccgcaaccggtgaaaac
cgcctttacgctagaaatgattcgccaatcacccgcgtcatgttcaatccgggcgatacc
atcaccaaccacgaaggctggcagctaaaagtggaagaagtgactcatgaaaatgggctg
attacatatatcggcacccgtttggatactgaggaaaccggcgtttcgatgcgtgaagtg
ttgctcgatagcaaactgacgtttagcaaaccgcaggatcggctatttgccggtcagatc
gatcgtatggatcgctttgccctgcgttttcgcgctcgtaaatatcaaagtgagcagttc
cgtctgccatggagtgggttacgcggtatccgtgccagcctgatcccacaccaattacat
atcgcctatgaagtgggtcagcgccatgcaccaagggtattactggccgatgaagtcggt
ttaggtaaaaccatcgaagccgggatgatcattcaccaacaactgttgtcaggccgtgct
gaacgtatcctgattgtggtgccggaaagcctgcaacatcagtggttggtggaaatgttg
cgccgcttcaatctgcgcttctcactgtttgatgacagccgttattccgaagccctgctc
gacagttctaacccgtttgaaaccgagcagatggttatctgttcactggattttgtgcgc
cgcaataagcaacgcctggaacaactggcagatgcatcttgggatctgttggtggtggat
gaggcgcaccatctggcctggagcgaagaagccccaagtcgtgaatatcaagtcattgaa
caattggctgagaatatcccaggggtgctgctgttgaccgcaacacctgagcaattgggc
cagcagagccactttgcccgtctgcgtttgctggatcccgatcgcttccacgattacgaa
gagttcgtcaatgaacagcagaagtatcgcccaattgcagatgcagtaacactgctgctg
ggtggtgagcgtttaactgacgataaactgaatctgttgggcgaactcattgatgagcag
gatattgagcccttgctgaaagcggccaacagccaaagtgaagacagcgaagctgctcgc
caagagttggtgacaatgctgatggacagacatggtaccagccgtatcttgttccgtaat
acccgtaatggggtgaaaggcttcccgcaccgcgtcctgcatcaaatcaaactgccattg
ccaacccaatatcagacggcgattaaagtatcaggcatcatgagtgccaaaaaaacgctg
gaagcgcgcgccaaagatatgctgtatcccgagcaaatctatcaggagtttgaaggtgag
aacgcaacctggtggaactttgacccacgggtagagtggttacttaactatctgattgct
aaccgtaatgagaaagtgttggttatctgtgcccaggcagccactgccttacaacttgaa
caagtgctacgtgaacgtgaagctattcgcgccgccgtgttccatgaaggtttatcactg
atagagcgtgaccgcgctgcggcctattttgcctctgaagaagatggcgctcaggtatta
ctgtgttctgagataggttcagaaggccgtaacttccagtttgcctgccagttggtgatg
ttcgacctgccgtttaacccggacttgctggaacaacgtattggtcgtctggaccgtatc
ggtcaaaaccgcgaaatccagatcatggtgccttatctggaacataccgcgcaggcgata
ttggtgcgttggtatcatgaaggtttggatgctttcgagcacacctgcccgaccggacgc
accatttatgacagcggctatcaagaactgattggctatctggcaacgccaagtgaacaa
gaagggttggatgagtttatccacgcctgccgtctacagcacgaagagttgaaactgcaa
ctggaacaaggtcgtgatcggctactggagatgcattccaacggcggcgagcatggtcaa
caactggcgcagatcattgcagatcaagataatgacgttaatttggtcagttttgcgctt
aacctgttcgatattgtcgggattaaccaagaagaccgcagtgacaacctgatcgtactg
accccctctgatcacatgctagtaccggacttccctgggctgccgcaagacggctgtacc
gtgacattcgatcgtgaacaggcgttatcgcgggaagatgcccagtttgtgagttgggag
cacccgatcatccgtaatggtttggatttgatcttgtccggcgataccggaagctgtgca
gtttctttattgaaaaacaaagcattaccagtaggaacactgttggctgaattggtttat
gtggtagaagctcaagcgccgaaacacctgcaattaacccgcttcttgccacccacccca
gtgcggatgctgatggacagaaatggcaccaatctggcggcacaggttgaatttgaaacc
tttaaccgtcagttgaatgcggtaaaccgtcatacctccagcaagctggtcaacgcagtg
caacaagaagtccacgccatgttgcaacaagcagaggcactggttgaagagcaggcaaaa
ctgttgattgaatcggccaagcacgaagctgatgataagctgagtaccgaactggcacgt
ttggaagccctgaaagcggttaacccaaatattcgtgatgacgaaatagaagcactggag
cataaccgtaaaatggtgctggaaaaccttaatcaagcgggctggcgtttagatgctatc
cgcctggtggtggtcacacatcagtaa
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