Yersinia pestis Harbin35: CH55_3916
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Entry
CH55_3916 CDS
T03717
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ypj
Yersinia pestis Harbin35
Pathway
ypj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH55_3916 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypj03400
]
CH55_3916 (uvrB)
DNA repair and recombination proteins [BR:
ypj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH55_3916 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH55_3916 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
SBDS_domain_II
AAA_30
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJK06627
UniProt:
Q8ZGW7
LinkDB
All DBs
Position
4272698..4274713
Genome browser
AA seq
671 aa
AA seq
DB search
MSKSFKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ
YSRNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPR
FTVYPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLG
QPSMRGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQV
HQLRQQFIAIS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatcattcaaactgcattctgtgtttaagccagctggcgatcagcctgaggct
atccgtaaattggaggaggggctggaaaatggtctggcacaccagaccctgctaggcgta
acaggatcaggcaaaacctttacggttgctaatgttattgccgatctgaaccggccaacc
atgatcctggccccgaacaaaacactggcagcgcaactttacggcgagatgaaagagttc
ttcccggataacgcggtagagtactttgtctcctactacgattattatcaacctgaagct
tacgtgcccagttctgatacttttattgagaaggatgcgtcggtcaatgaacacatcgag
cagatgcggctatccgccaccaaggccttgttagagcggcgagatgtggtggtcgtggcg
tcggtttccgccatttatggtctgggcgatccagatctgtatctgaaaatgatgttgcac
ctaacccgtggcatgatcattgatcaacgttccattttacgtcgcctgtcagaattgcaa
tacagccgcaacgatcaggtatttcaacgcggtacttttcgggttcggggtgaagtgatc
gatatcttcccggcagaatctgatgagtgggcgctgcgggtagaattatttgatgaggaa
gtcgagcgattatccattttcgatccactcacgggtcagctacagcatgaagtccctcgc
tttactgtttatcctaaaacacactacgtcaccccacgggaacgcattctacaggcgatg
gaagagataaaagtcgagctggcggagcggcgtcaggtgttgttagccaataacaaatta
ttggaagagcaacgtctctcccaacgtactcagtttgatcttgaaatgatgaatgagctg
ggctattgctcgggtatcgaaaactattctcgctatctctctggccgtgggccgggtgaa
gcgcctcccacgttatttgactatttaccggctgatggtttgttgattgtcgatgagtcc
cacgtcactattccgcaaattggtggcatgtacaaaggcgaccgctcacgtaaagaaacc
ctggtagagtacggtttccgtttgccatcggcactggataaccggccaatgcgctttgaa
gagttcgaagcgttggcaccgcaaacgatctatgtttcggccacaccgggcaaatacgag
ctggagaaatctggcggtgacattattgagcaagtggtgcggccaacgggcctactcgat
ccgttgatcgaggtccgtccggtagccacacaagtggatgacttgctgtcagagatccgc
atccgtgctgcgattaacgagcgggtactggtgaccacgctaacgaaacggatggccgag
gacttaaccgactatctcagcgagcatggcgccaaagtacgttacctgcattcagatatc
gatactgtggagcgggtggagattattcgcgatttacgcttgggtgaatttgatgtgctg
gtgggcatcaacttgctgcgggaagggttggatatgccagaggtctcattggttgccatt
cttgatgcagataaagagggcttcttgcgttctgaacgctccttgattcagactattggt
cgtgctgcccgtaacctcaacggcaaggcgattttatacggcgatagaattaccgcctcg
atggaaaaagccattggcgaaacggaacggcggcgcgctaaacagcaggcgtataatgaa
gaacgcaggattattcctcaggggctaaacaaaaagattggcgatatcctgcaattgggc
cagccttcaatgcgcggcaaaggaaaagggcgcggcagtcataaaatggccgataccacc
caatatcaatctttgtcgccgaaagcacttgatcagaaaatccgtgaactggaagcaaaa
atgtatacatatgcgcaaaacctggagtttgaacaggcggctgaattacgtgatcaggtt
catcaactgcggcaacagtttattgcaatatcttaa
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integrated database retrieval system
