Yersinia pestis El Dorado: CH46_3395
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Entry
CH46_3395 CDS
T03719
Symbol
rafR
Name
(GenBank) HTH-type transcriptional regulator rafR
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
ypl
Yersinia pestis El Dorado
Brite
KEGG Orthology (KO) [BR:
ypl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ypl03000
]
CH46_3395 (rafR)
Transcription factors [BR:
ypl03000
]
Prokaryotic type
Helix-turn-helix
LacI family
CH46_3395 (rafR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_1
LacI
Peripla_BP_3
HTH_8
Peripla_BP_4
HTH_24
HTH_38
HTH_AsnC-type
HTH_23
HTH_28
HTH_50
HTH_IclR
HTH_3
HTH_Tnp_ISL3
HTH_Crp_2
HTH_36
Sigma54_DBD
HTH_35
Motif
Other DBs
NCBI-ProteinID:
AJJ16166
UniProt:
A0A3G5L2J1
Q8D089
LinkDB
All DBs
Position
complement(3695019..3695906)
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AA seq
295 aa
AA seq
DB search
MSLKKIANELGLSSTTVSRALNGYDDVAAETRERIIDAAKRLGYQPNSLARRLKMGRTDA
IALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDA
LIVAHTQPEDFRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQR
IAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPP
TAIITDCNMLGDGVASALDKAGLLGGEGISLIVTNGAIVIHTQRLKSDPGGNLLS
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgaagaaaattgcaaatgagcttgggctgtcctccacaacggtaagccgcgcg
ttaaatggctatgatgatgttgcggccgaaacacgtgagcggattatcgatgcggccaag
agattgggttatcaaccgaattccttagctcggcggcttaaaatggggagaaccgatgcc
attgctttggcgtatccatcacgtccacgagtgttgaataattcgacatttttggaaatg
ataagttggataggtatcgaactcggaaaacggggtctcgatctgttgctcattcctgat
gaacctggtgagaaataccagtcacttatccacttggtggaaacgcgtagagtggatgca
ttgatcgtggctcatacccagcctgaagactttcggttgcagtatttgcagaaacaaaac
tttccttttttggcattggggcgtagccatttacccaagccatatgcatggtttgatttt
gataatcacgctggcgcttcgttggcagtgaagcggcttctcgaacttgggcaccagaga
attgcatttgtgagtaccgatgcaaggatttcatatgtcgatcagcgtttgcagggatat
gtgcagacgatgtccgaagcgggcctgatgccgttggcagggtatctgcaaaaagcggat
cccactcgtcctggcggttatcttgctgcctcgcgtttattggcgcttgaggttcctcct
actgccattatcaccgactgtaatatgctgggtgatggcgtggcgagtgcgcttgataaa
gcgggcttgttgggcggcgaggggatatcgcttattgtaacgaacggtgcaatagtgatc
cacacccaacgcctgaaatcagatccagggggtaatctgctctcctga
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