Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_08390
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Entry
UGYR_08390 CDS
T03887
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UGYR_08390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_08390
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UGYR_08390
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UGYR_08390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_25
nSTAND3
NACHT
T2SSE
AAA_23
Viral_helicase1
cobW
ScfRs
DUF1924
Motif
Other DBs
NCBI-ProteinID:
AKA38417
UniProt:
A0A085UAX7
LinkDB
All DBs
Position
1825460..1828294
Genome browser
AA seq
944 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVMAQPEGRRLMLLAPVVQDRKGEHTKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALELSGGTAVVADMDDP
KAEELLFSANFACPICGYSMSELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNTLGSETQKAVLYGSGKETIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCTSCHGTRLRKEARY
VFVENTTLPEISELSIGHALTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGHVVAEGTVDDIMAAPDSLTGQFLSGKREIAI
PAQRVPGDPNKVLKLIGATGNNLKDVTLTLPIGLFTCITGVSGSGKSTLINDTLYSIAQR
QLNGATITEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRTRGYNPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEVKY
KGKNIHEVLEMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPLLARKS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcgaagttcggggcgctcgcacccataatctcaagaatatcaacctgatt
atcccgcgcgacaaactgattgttgtcaccggcctgtccggctctggtaaatcttcactg
gcttttgatactttatatgccgagggccagcgccgttatgttgagtctctttccgcctat
gcacgccaatttctatcgttaatggaaaaaccggacgttgaccatatcgaaggtctgtct
ccagcgatttctattgagcaaaaatcaacctcccataacccgcgttctaccgtcggcacc
attaccgaaattcacgattatctacgtctgctgtttgcccgcgttggggaacctcgctgt
cccgatcacgatgtccctctggcagcacagaccgtcagccagatggttgataacgtgatg
gctcagccggaaggtcgccgcttgatgctgttggcaccggtggtacaagatcgtaaaggc
gaacataccaaaacgctggaaaacctggcgactcagggttatatccgtgctcgcattgac
ggtgaagtctgcgatctctccgatccgcccaaactggagctacaaaagaagcacaccatt
gaagtcgtcgtggatcgctttaaagtgcgggaggatctggcgcagcgcctggctgaatct
tttgaaaccgcgctggagttatccggtggtaccgccgtggtcgctgatatggacgaccca
aaagctgaagagttgctgttctccgccaattttgcctgtccaatttgcggctacagtatg
agcgaactggaaccacgcctgttctcctttaacaacccagccggtgcctgcccgacctgt
gatgggctgggtgtacagcaattcttcgatccggatcgggtgctgcaaaaccccgagttg
tcactagctggcggtgccatccgcggctgggatcgccgtaatttctattatttccagatg
ctacgttcattggctgaacactataaattcgatatcgaagcaccgttcaataccctgggt
agcgaaacgcaaaaagcggttttatacggctcaggtaaagagaccatcgaatttaaatat
atcaatgaccgtggtgacaccacggtacgccgtcatccgtttgaaggcgtactacacaat
atggaacggcgttataaagaaacagaatccagtgccgtacgtgaagagctggcgaaattt
atcagcaaccgttcctgcacctcctgccacgggacacgcctgcgcaaagaagcccgttat
gtatttgtggaaaatactacgctgccggaaatttccgagttgagcatcggccacgctctg
accttcttccagaatatgaaactgagcggccaacgcgcccaaatagcagaaaaagtgctg
aaagaaatcggcgaccgcctgaagtttttagtcaacgtaggcctgaattacctttctcta
tcgcgctccgcggatacactttccggcggcgaagcccagcgtattcgtctggccagccag
attggtgccggtctggtcggtgtgatgtatgtcttggatgaaccctcaatcggtttacat
cagcgggataacgagcgtttgttggaaaccctgattcacctgcgtaatctgggtaatacc
gtgattgtggttgagcatgatgaagatgctattcgggcggcagaccatgtcattgatatc
ggccccggagctggcgttcacggtggacacgtagttgccgaagggacagtcgatgacatt
atggccgcacctgactcactgaccggccagttcctcagcgggaaacgggaaattgcgatt
cctgcccaacgggtgcctggtgatccgaataaagtgctaaaactgatcggcgcaacaggc
aacaatctgaaagatgtcacactaacattaccgattggtttatttacctgtattaccggc
gtgtccggttcgggtaaatcaacgctgattaatgacactttatattccattgctcagcgt
caactgaatggtgccaccattacggaacccgcagcgtaccgtgatattcagggactggaa
catttcgataaagtcatcgatatagaccagagcccgattggacgtacgccgcgttctaac
ccagcgacctataccggtatttttacgccagtccgtgagttatttgctggcgtgccagaa
tcacgcacccgcggatacaatccaggccgattcagctttaacgttaaaggcgggcgttgc
gaagcatgtcaaggcgacggcgtaatcaaggtagaaatgcatttcctgccagatatttac
gtcccttgtgatcagtgcaaaggcaaacgctataaccgtgaaacgctggaagtgaaatac
aaaggcaaaaatattcacgaagtactggaaatgacgattgaagaagcacgtgagttcttc
gatgcggtgccagcattggcgcggaaactgcaaacgttgattgacgtgggcttatcctat
atttgtctcggtcaatccgcgacaacgctgtctggcggtgaagcccagcgagtgaaactg
tctcgcgagctgtccaaacgtggcaccggtcaaacactgtatattctggatgaacccaca
accggtctgcattttgccgatattcagcaattgttggcggtactccatcagttacgggat
cagggcaacaccattgtcgtgattgagcataatctggacgtaattaaaaccgcggactgg
attgtcgatctcggcccagaaggcggtagtggcggtggcgagattttggtatcaggcacg
ccagaaaccgtcgccgagtgcgcggcgtcccacacagcgcgattcctaaaaccgctgctg
gcgcgcaagtcatag
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