KEGG   Zalophus californianus (California sea lion): 113923712
Entry
113923712         CDS       T07874                                 
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
  KO
K16617  collagen type XIII alpha
Organism
zca  Zalophus californianus (California sea lion)
Pathway
zca04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:zca00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    113923712 (COL13A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:zca00536]
    113923712 (COL13A1)
Glycosaminoglycan binding proteins [BR:zca00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   113923712 (COL13A1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 113923712
NCBI-ProteinID: XP_027452574
EnsemblRapid: ENSZCAG00025022367
UniProt: A0A6J2D8V0
LinkDB
Position
15:31045604..31189974
AA seq 734 aa
MVAERARKAAAAGARGPGEPGAPAAVAPAERCARLPSPGSCGLLALALCSLALSLLAHFR
TAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREALPKTSSGCHCPPGP
PGPAGRPGLPGDKGAIGMPGRVGVKGHPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGHPGPKGEMGLTGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPV
IKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGPPGLPGPMGPPGLPGPPGPKGDPGIQGY
HGRKGERGMPGMPGKHGAKGAPGIAVVGMKGEPGTPGAKGEKGAVGSPGLFGLMGQKGEK
GDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGRQGDKGEPGAAGDQGPAGPKG
TKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGQKGEIGLPGPPGHD
GEKGPRGKPGDMGPPGPQGPPGKFGPTGMKGEHGHPGSPGEKGEKGETGQAGPPGLDGPT
GEKGEPGGQGRPGATGLPGPIGLPGFTGEKGEPGEKGEPGVEVPGPPGPEGPPGPPGLQG
VPGPKGEAGLDGAKGETGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG
ERGSKGDLGVTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGSKGDKGDQGAPGLDAPCP
LGEDGLPVQGCWNK
NT seq 2205 nt   +upstreamnt  +downstreamnt
atggtagcggagcgcgcccgcaaagcggcagcagccggtgcccgcggccccggggagccg
ggcgcgcccgcggcggtggcgccggccgagcgctgcgcgcggctgccgagcccggggtcg
tgcgggctgctggcgctggccctgtgctcgctggcgctcagcctgctcgcccactttcgg
accgccgagctgcaggcccgggtgctgcgcctggaagcggagcgtggggagcagcaaatg
gagacggctattttgggacgagtcaaccaactgctggatgagaaatggaagctccactct
cggaggcgccgggaggccctgccgaagacgtcttcagggtgtcactgtccgccaggacct
cctggtcctgccggaagacccggcctcccaggggacaaaggtgccattgggatgcctgga
cgtgtgggagtaaagggccacccaggcgagaagggggccccaggagacgccggcatgtcc
atcatcggcccccgcggccctcctggtcagccgggcactcgaggtttccctggatttccg
ggtcccattgggctcgatggcaaaccgggccaccccggacccaaaggggagatgggcctg
acgggtccccgaggacagccgggacctcaagggcaaaaaggagaaaagggtcagtgtgga
gagtacccacatcggctgctgcctctcctcaattcagtgcgactggctccacccccagtc
ataaaaagacggaccttccagggtgaacagggccaggccggcatccaaggcccgccgggg
ccaccaggcccgcctggaccaagtggacctctggggcccccgggactgccagggcccatg
gggccacccggcttacccgggcctcctggaccaaagggagacccaggaatccagggctac
cacggccggaagggagaacggggcatgccagggatgccgggcaaacatggagcaaaggga
gctcctggaattgctgtggttgggatgaagggtgagccagggaccccaggagccaagggc
gaaaagggggctgtaggctcccctgggctattcggcctcatggggcagaagggagaaaaa
ggcgatgctggtaactccatcggagggggcagaggggagcccggccccccagggctacct
gggcccccagggccaaagggagaagcaggggttgatggccaggccggccccccaggacgg
caaggagacaagggggagcctggagcagctggagaccagggaccagccggccccaagggc
accaagggggaaccagggaaaggagagatggtggactacaacggaaacatcaacgaggct
ctccaggagatccgaacgctggccttgatggggccccctggtcttcccggacaaataggc
ccacccggagccccaggccagaagggggagattggacttccaggccctccaggacacgac
ggggaaaagggacctcgaggcaagccaggagacatgggccctcccggtccccaaggcccc
ccaggaaagtttggacctacaggaatgaagggagaacacggacacccagggagcccagga
gagaagggggagaaaggggagacaggacaggcaggccccccgggtctagacggcccaact
ggggagaaaggagaaccaggtggccaagggagacccggagcaacaggattgcctggccct
atcgggctcccgggatttacaggagagaaaggagagcctggggagaagggggagccagga
gtggaggttcctgggcctccagggccagaggggccccccggacctccggggctccaaggt
gttcctggaccaaagggggaagcaggactagatggagcaaagggagagacgggtgtccag
ggagagaaaggagatcgagggccgctgggattacccggagcttcaggtttggacggcagg
cctgggccaccgggtactccaggaccaatcggagtcccaggcccagcgggaccaaagggc
gagaggggcagcaaaggcgacctgggggtgacgggaccaacaggagcagctggccttcct
ggtttacatggaccacccggagacaaaggaaaccggggggagagggggaagaaaggctct
agagggtccaaaggggataagggagaccaaggagcgcctggattagatgccccctgccca
ttgggtgaagacggcttaccagtccagggttgctggaacaagtga

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