Zalophus californianus (California sea lion): 113923712
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Entry
113923712 CDS
T07874
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113923712 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113923712 (COL13A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113923712 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113923712
NCBI-ProteinID:
XP_027452574
EnsemblRapid:
ENSZCAG00025022367
UniProt:
A0A6J2D8V0
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All DBs
Position
15:31045604..31189974
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AA seq
734 aa
AA seq
DB search
MVAERARKAAAAGARGPGEPGAPAAVAPAERCARLPSPGSCGLLALALCSLALSLLAHFR
TAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREALPKTSSGCHCPPGP
PGPAGRPGLPGDKGAIGMPGRVGVKGHPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGHPGPKGEMGLTGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPV
IKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGPPGLPGPMGPPGLPGPPGPKGDPGIQGY
HGRKGERGMPGMPGKHGAKGAPGIAVVGMKGEPGTPGAKGEKGAVGSPGLFGLMGQKGEK
GDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGRQGDKGEPGAAGDQGPAGPKG
TKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGQKGEIGLPGPPGHD
GEKGPRGKPGDMGPPGPQGPPGKFGPTGMKGEHGHPGSPGEKGEKGETGQAGPPGLDGPT
GEKGEPGGQGRPGATGLPGPIGLPGFTGEKGEPGEKGEPGVEVPGPPGPEGPPGPPGLQG
VPGPKGEAGLDGAKGETGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG
ERGSKGDLGVTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGSKGDKGDQGAPGLDAPCP
LGEDGLPVQGCWNK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgcgcccgcaaagcggcagcagccggtgcccgcggccccggggagccg
ggcgcgcccgcggcggtggcgccggccgagcgctgcgcgcggctgccgagcccggggtcg
tgcgggctgctggcgctggccctgtgctcgctggcgctcagcctgctcgcccactttcgg
accgccgagctgcaggcccgggtgctgcgcctggaagcggagcgtggggagcagcaaatg
gagacggctattttgggacgagtcaaccaactgctggatgagaaatggaagctccactct
cggaggcgccgggaggccctgccgaagacgtcttcagggtgtcactgtccgccaggacct
cctggtcctgccggaagacccggcctcccaggggacaaaggtgccattgggatgcctgga
cgtgtgggagtaaagggccacccaggcgagaagggggccccaggagacgccggcatgtcc
atcatcggcccccgcggccctcctggtcagccgggcactcgaggtttccctggatttccg
ggtcccattgggctcgatggcaaaccgggccaccccggacccaaaggggagatgggcctg
acgggtccccgaggacagccgggacctcaagggcaaaaaggagaaaagggtcagtgtgga
gagtacccacatcggctgctgcctctcctcaattcagtgcgactggctccacccccagtc
ataaaaagacggaccttccagggtgaacagggccaggccggcatccaaggcccgccgggg
ccaccaggcccgcctggaccaagtggacctctggggcccccgggactgccagggcccatg
gggccacccggcttacccgggcctcctggaccaaagggagacccaggaatccagggctac
cacggccggaagggagaacggggcatgccagggatgccgggcaaacatggagcaaaggga
gctcctggaattgctgtggttgggatgaagggtgagccagggaccccaggagccaagggc
gaaaagggggctgtaggctcccctgggctattcggcctcatggggcagaagggagaaaaa
ggcgatgctggtaactccatcggagggggcagaggggagcccggccccccagggctacct
gggcccccagggccaaagggagaagcaggggttgatggccaggccggccccccaggacgg
caaggagacaagggggagcctggagcagctggagaccagggaccagccggccccaagggc
accaagggggaaccagggaaaggagagatggtggactacaacggaaacatcaacgaggct
ctccaggagatccgaacgctggccttgatggggccccctggtcttcccggacaaataggc
ccacccggagccccaggccagaagggggagattggacttccaggccctccaggacacgac
ggggaaaagggacctcgaggcaagccaggagacatgggccctcccggtccccaaggcccc
ccaggaaagtttggacctacaggaatgaagggagaacacggacacccagggagcccagga
gagaagggggagaaaggggagacaggacaggcaggccccccgggtctagacggcccaact
ggggagaaaggagaaccaggtggccaagggagacccggagcaacaggattgcctggccct
atcgggctcccgggatttacaggagagaaaggagagcctggggagaagggggagccagga
gtggaggttcctgggcctccagggccagaggggccccccggacctccggggctccaaggt
gttcctggaccaaagggggaagcaggactagatggagcaaagggagagacgggtgtccag
ggagagaaaggagatcgagggccgctgggattacccggagcttcaggtttggacggcagg
cctgggccaccgggtactccaggaccaatcggagtcccaggcccagcgggaccaaagggc
gagaggggcagcaaaggcgacctgggggtgacgggaccaacaggagcagctggccttcct
ggtttacatggaccacccggagacaaaggaaaccggggggagagggggaagaaaggctct
agagggtccaaaggggataagggagaccaaggagcgcctggattagatgccccctgccca
ttgggtgaagacggcttaccagtccagggttgctggaacaagtga
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