Ziziphus jujuba (Chinese jujube): 107420912
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Entry
107420912 CDS
T04794
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X6
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107420912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107420912
Enzymes [BR:
zju01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
107420912
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
107420912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_central
PAP_NTPase
PAP_RNA-bind
NTP_transf_2
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
107420912
NCBI-ProteinID:
XP_015885462
UniProt:
A0A6P3ZY52
LinkDB
All DBs
Position
5:complement(join(2308154..2309161,2309313..2309477,2309566..2309895,2309986..2310048,2310141..2310254,2310620..2310781,2310863..2310925,2311229..2311336,2311431..2311433))
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AA seq
671 aa
AA seq
DB search
MVVKGWVKLLTRQRGYTDQMVEDANAVIITFGSYRLGVHGPGADIDTLCVGPSYVNREED
FFIVLHNILSEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDIANGS
VLYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVN
WALLVARVCQLYPSAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRRNPRD
RFHHMPIITPAYPCMNSSYNVSISTLRVMMEQFNHANRITEDIELNKAQWSCLFEPYRFF
EAYKNYLQVDIIAADAVDLLTWKGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSKP
CPNFAFFLGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMFWKPGMDIYVSHVRRKQLP
AFLFPDGHKRSRMLRHVSLDAEKSCEEASGFQSGSAEKNAKRKADSETMDLKSTRPEKQA
FISPQPPESASPESCASRSGITSHTSFNDRVIVESLTMVDRDSSSEMRSSGHLDSEKCTL
ANDVEMVNTMHESINLEEQASVSEHSLPGVGNKVKLLDLVEKPYYQMESVASCAVACSEF
KGTNQIGLNGEDLLFVDTMSVKGKSYTGRLLGWTKGAVDIDQELNKPCNHTAGIMNVCTN
QAPAHGTSIAR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaaaagggtgggtcaagctactaactcgtcaaagaggctacacagatcagatg
gtagaagatgcaaatgctgtcattatcacctttgggtcctaccgtttgggtgtacatggg
ccgggggctgacatcgacactctctgtgttgggccatcttatgtgaatcgagaggaagat
ttttttattgtgttgcataatatcctatctgagatggaagaagtaactgaacttcaacca
gttccagatgctcatgtcccagtaatgaaattcaagttccaaggaatatcaattgatctt
ctctatgcaagtatttctcttttggttgttccagaagatctggacatcgccaatgggtct
gtgctatatgatgttgatgagcaaactgttcgaagtcttaatggctgcagggttgcagat
caaattcttaaactggttccaaatgttgagcattttcgaaccacgctcagatgtttaaag
ttttgggccaaaagacgaggtgtttattcgaatgttactggtttccttggtggtgtaaac
tgggctcttttagttgctcgggtgtgccagctttacccgagtgcaattcctagtatgttg
gtttcgaggttcttcagggtatatacccaatggcgttggccaaatcctgtaatgctctgt
tcaattgaggagaatgaactcgggtttcctgtatgggatcctcgtagaaaccctcgagat
cgctttcatcatatgcccataattactcctgcatacccttgcatgaactctagttataat
gtatcaataagcactcttcgagtcatgatggaacaatttaaccatgctaacagaattact
gaggatattgagctaaacaaagcccagtggagttgtctgtttgagccttatcgctttttt
gaggcatataaaaactatttgcaggtggacataatagcagcagatgcagttgatttgctt
acatggaagggatgggtggaatcacggcttagacagcttacacttaagatagagcgggat
acaaatggtatgctgcagtgccatccatacccacatgagtatgccgacacatctaagccg
tgtccgaattttgctttcttcttgggtttgcagaggaaagagggagtgagaggtcaagaa
ggccagcaattcgacatacgtggaacagttgatgagttcaggcaagaaataaacatgtat
atgttctggaaacctgggatggatatttatgtttcacatgttcgtagaaagcagcttcct
gcttttctcttccctgatggacataaacggtctcgaatgttaaggcatgttagcctagat
gctgaaaaaagttgtgaagaggcttcaggttttcagtctggttctgctgaaaaaaatgct
aagaggaaagctgattcagaaactatggatcttaagtcaactaggccagagaagcaggcc
tttattagcccacaaccgccggagtctgcttcaccagaaagttgtgcaagtaggtctggt
ataacatctcatactagcttcaatgacagggttatagtagagagtctaacaatggtggat
agggatagcagttcagagatgaggtcatctggacacttggatagtgaaaagtgcacctta
gcgaatgatgttgagatggttaacaccatgcacgagtctattaacctagaagagcaggca
tctgtaagtgagcatagtctaccaggagttggcaacaaggtaaagcttcttgaccttgtg
gagaaaccttattatcaaatggaatcagtagcttcatgtgcagttgcttgttcagaattc
aagggaacaaatcagattggacttaatggggaggatctgctgttcgttgacacaatgagt
gtgaaaggtaaatcctatactgggagactgcttggatggacaaaaggtgctgttgatatt
gatcaagaactaaacaaaccatgcaatcatacagcagggattatgaatgtgtgtacaaat
caagctccagcacatggaacctcaattgcaaggtga
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