Zunongwangia profunda: ZPR_0016
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Entry
ZPR_0016 CDS
T01216
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
zpr
Zunongwangia profunda
Pathway
zpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZPR_0016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zpr03019
]
ZPR_0016
03016 Transfer RNA biogenesis [BR:
zpr03016
]
ZPR_0016
Enzymes [BR:
zpr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ZPR_0016
Messenger RNA biogenesis [BR:
zpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ZPR_0016
Transfer RNA biogenesis [BR:
zpr03016
]
Prokaryotic type
tRNA degradation factors
ZPR_0016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rrp44_S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADF50380
UniProt:
D5BBE6
LinkDB
All DBs
Position
17418..19628
Genome browser
AA seq
736 aa
AA seq
DB search
MRMKRKKKNNKSSAKLGNLDKKITDILRKDAGKAYNYKQIASKLGVDDPSSRNQITKKLA
QLAAKKEINQVDRGKFMIEKGANYYTGVLDMSSKGYGFVIVDEFEDDIMIPQQNLNSAFH
GDEVEIYVYKHRRRKKSEGEITRIIKRKRTSFVGVLQLKKDFGFVVVDDPKMYTDFFVQK
NKLGEAQDGDKVLVEFDDWPKKADSPFGVITRVLGTPGHHNTEIHSILAQYGLPADFPEE
VEEFANKIDTSISDQEIKKRRDMRDVLTFTIDPKDAKDFDDALSFRKLDNGNIELGVHIA
DVSHYLQPDTILDQEAYDRATSVYLVDRVVPMLPEILSNGACSLRPNEEKYTFSAVFELD
KNAKVKDQWFGRTVTYSDARFAYEEAQHIIETMENKIPEDISIREEGSYTVDNAIVEAVL
ELDRLAKKMRSVRMREGAISFDKVEVKFHLDEENEPIGVFFKTSKDANKLIEEFMLLANK
KVAEFIGKQKPKKTFVYRCHDEPNEEKLASLQTVVGRFGHSLNLSDRKSVTSSLNSLLKN
VQGKKEQNLVDTLAIRTMSKAYYGTENIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQQY
LDGAASASEDVYDEKCHHSSEMENLAANAERDSIKYMQVKFMQDHQDEEFLGVISGVTDW
GIFVEIEQNKCEGMIRLRDLSDDHYEFNEEHYAVIGRKTKKVYQLGDEVYVKVKNADLVK
RHLDFTMLGLKEDFKG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgaaacgaaagaaaaaaaacaataaatccagtgcaaaactgggaaatcttgat
aaaaagattacagatatcctgcgaaaggatgcaggtaaagcttataattacaaacaaatt
gcatcgaagttaggtgtagacgatccgagcagtcgaaaccaaattaccaaaaaattagct
caattagctgcaaaaaaagaaattaaccaggttgatcgtggtaaatttatgatagaaaaa
ggagctaattactacacaggcgtgctcgacatgtcgagcaaaggatacggatttgtaatt
gtagacgaatttgaggatgatattatgattcctcaacaaaacttaaattccgcttttcat
ggggatgaagttgaaatttatgtttataaacatcgacgtagaaaaaaatctgaaggagaa
attaccaggatcatcaaacgtaaacgaaccagttttgtaggggtgttgcaactgaagaag
gactttggttttgtagtagtcgatgatcctaaaatgtataccgacttttttgttcagaaa
aataagttgggagaagcgcaggatggggataaggttttggtagaatttgatgactggcca
aaaaaagccgattctccttttggagtgattaccagagtgctgggtactccaggacatcat
aatacagaaatacattcgattttagcgcaatacggcttaccggcagattttcctgaagag
gtggaagaatttgctaataaaatcgatacttcaatttcagatcaggagattaaaaagcgt
cgtgatatgcgcgatgtgctcacttttaccatagatccaaaagatgccaaggactttgat
gatgctttaagctttagaaaacttgacaacggaaatatagaactgggagttcatatcgcc
gatgtttcacactatctgcaacctgatactattttagatcaagaagcctacgatcgtgcg
acttcggtttatttggtagatagggtagtaccgatgcttcctgaaattttatcaaacggc
gcctgttccctacgaccaaatgaagaaaaatatacgttttctgcggtatttgaattagat
aaaaatgctaaagtaaaagatcaatggtttggtagaacggtgacttattctgatgccaga
tttgcttatgaggaagcacagcatattatcgaaaccatggaaaataaaattccggaagat
atttctattcgtgaagaaggttcctatacggtggataatgctattgtagaagctgtttta
gaattagatcgtttggcaaagaaaatgcgatcggtaagaatgcgtgagggtgcaatttcc
tttgataaggtagaagtgaaatttcatttagatgaagaaaatgaacctataggggtattc
tttaaaacttctaaagatgctaacaaacttattgaagagtttatgctcttggccaataaa
aaagtagcggaatttataggaaagcaaaaacctaagaaaacttttgtttatcgatgccac
gacgagcccaatgaagagaaattagcgtctttacaaaccgttgtaggtcgctttggtcat
tcgcttaatctaagtgacagaaaaagcgttacgagctctctaaatagccttttaaagaat
gtacagggtaaaaaagaacaaaatcttgtagatacgctggcaattcgtaccatgagtaaa
gcttattacggaacagaaaatatagggcattatggtttagcttttgagtattatactcat
tttacttcaccaattaggcgttatccggatgtgatggtacatcgtttgttacaacagtat
ctggatggtgcagcatcagccagtgaagatgtttacgatgaaaaatgccatcacagtagt
gagatggaaaatcttgcggcgaatgccgagcgggattccataaaatacatgcaggtgaag
tttatgcaggatcatcaagatgaagagtttcttggggtaatttctggagtgaccgattgg
ggaatttttgtggagatcgaacaaaataaatgtgaaggaatgattcgtttaagagactta
tcagacgatcattacgaatttaatgaagagcattatgctgtgattggccgaaaaaccaaa
aaggtatatcagcttggggacgaggtgtatgtaaaagttaaaaatgccgacctggtgaaa
cgtcacctggattttaccatgttgggattaaaagaagattttaaaggatag
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