Entry
Name
Pup amidohydrolase;
dop (gene name);
Pup deamidase;
depupylase/deamidase;
DPUP;
depupylase
Class
Hydrolases;
Acting on carbon-nitrogen bonds, other than peptide bonds;
In linear amides
BRITE hierarchy
Sysname
[prokaryotic ubiquitin-like protein]-L-glutamine amidohydrolase
Reaction(IUBMB)
[prokaryotic ubiquitin-like protein]-L-glutamine + H2O = [prokaryotic ubiquitin-like protein]-L-glutamate + NH3 [RN:
R11209 ]
Reaction(KEGG)
Substrate
[prokaryotic ubiquitin-like protein]-L-glutamine [CPD:
C21179 ];
H2O [CPD:
C00001 ]
Product
[prokaryotic ubiquitin-like protein]-L-glutamate [CPD:
C21177 ];
NH3 [CPD:
C00014 ]
Comment
The enzyme has been characterized from the bacterium Mycobacterium tuberculosis. It catalyses the hydrolysis of the amido group of the C-terminal glutamine of prokaryotic ubiquitin-like protein (Pup), thus activating it for ligation to target proteins, a process catalysed by EC
6.3.1.19 , prokaryotic ubiquitin-like protein ligase. The reaction requires ATP as cofactor but not its hydrolysis. The enzyme also catalyses the hydrolytic cleavage of the bond formed by the ligase, between an epsilon-amino group of a lysine residue of the target protein and the gamma-carboxylate of the C-terminal glutamate of the prokaryotic ubiquitin-like protein.
History
EC 3.5.1.119 created 2015
Orthology
Genes
ROL : CA51_04350(dop_1) CA51_18280(dop_2)
NMV : NITMOv2_0801(dop) NITMOv2_3552(dop)
NIO : NITINOP_1617(dop) NITINOP_3240(dop)
NJA : NSJP_0046(dop) NSJP_1982(dop)
NKF : Nkreftii_001175 Nkreftii_003694 Nkreftii_003698
NIF : W02_14170(dop) W02_32280(dop)
NTI : DNFV4_01212 DNFV4_01216 DNFV4_03154
NALL : PP769_00735(dop) PP769_15910
NNEO : PQG83_06985 PQG83_11905(dop)
LFI : LFML04_0391 LFML04_1975
LFP : Y981_02005 Y981_10045
LEG : ABH19_02080 ABH19_10420
MAVM : MAA44156_01822(dop)
MBAI : MB901379_02861(dop)
MPHL : MPHLCCUG_02722(dop)
MAUU : NCTC10437_03336(dop)
MFLV : NCTC10271_02095(dop)
MSAL : DSM43276_01885(dop)
CDD : CDCE8392_1148(pafA1)
CDIP : ERS451417_01247(pafA1)
CPP : CpP54B96_1054(pafA1)
CUC : CULC809_01095(pafA1)
CUN : Cul210932_1151(pafA1)
CUQ : Cul210931_1101(pafA1)
CUZ : Cul05146_1175(pafA1)
CUJ : CUL131002_1133c(pafA1)
CUS : CulFRC11_1119(pafA1)
CMIN : NCTC10288_01262(dop)
CRL : NCTC7448_01912(pafA1)
CCYS : SAMEA4530656_1097(dop)
NFR : ERS450000_00898(dop)
NAD : NCTC11293_04458(dop)
NSPU : IFM12276_23630(dop)
RCR : NCTC10994_00439(dop)
RANT : RHODO2019_07900(dop)
SLE : sle_54710(sle_54710)
SXT : KPP03845_101878(dop)
AAGI : NCTC2676_1_01367(dop)
DCO : SAMEA4475696_1707(dop)
NAQU : ENKNEFLB_02404(dop)
MCU : HMPREF0573_10276 HMPREF0573_11655
TBW : NCTC13354_00053(dop)
AOS : AXE84_08960 AXE84_11470
ACTC : CHIBA101_1154 CHIBA101_1752
ANE : ATCC27039_08540 ATCC27039_13730
AHW : NCTC11636_00464(dop_1) NCTC11636_02424(dop_2)
AIR : AIF0345_0912(dop) AIF0345_1808(pafA_3)
ASLA : NCTC11923_01765(dop_1) NCTC11923_02466(dop_2)
AVC : NCTC10951_00887(dop_1) NCTC10951_01231(dop_2)
AWE : JG540_05655 JG540_07845
AMAM : HPC72_04815 HPC72_07390
AREP : ID810_04435 ID810_06715
AMAS : QU670_07595 QU670_10730
ACAP : MANAM107_02420 MANAM107_22790
ALIL : D5R93_00480 D5R93_07085
ACHN : JJJ14_05965 JJJ14_08470
FSL : EJO69_01735 EJO69_10290
FLH : EJ997_02810 EJ997_10030
» show all
Taxonomy
Reference
Authors
Striebel F, Imkamp F, Sutter M, Steiner M, Mamedov A, Weber-Ban E
Title
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes.
Journal
Sequence
Reference
Authors
Burns KE, Cerda-Maira FA, Wang T, Li H, Bishai WR, Darwin KH
Title
"Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates.
Journal
Sequence
Reference
Authors
Striebel F, Imkamp F, Ozcelik D, Weber-Ban E
Title
Pupylation as a signal for proteasomal degradation in bacteria.
Journal
Other DBs
ExPASy - ENZYME nomenclature database: 3.5.1.119
LinkDB
All DBs