Paracidovorax avenae: Acav_0015
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Entry
Acav_0015 CDS
T01445
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aaa
Paracidovorax avenae
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aaa03016
]
Acav_0015
Enzymes [BR:
aaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Acav_0015
Transfer RNA biogenesis [BR:
aaa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Acav_0015
Prokaryotic type
tRNA splicing ligases
Acav_0015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADX43943
UniProt:
F0Q060
LinkDB
All DBs
Position
22985..24274
Genome browser
AA seq
429 aa
AA seq
DB search
MAEDNFSSTLVAATYFMEKNNMSKTNYQLQEVPGGVPVKMWTQGVPVEDEARQQLANAAR
LPIVFKHIAAMPDVHLGIGATVGSVIPTLKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDN
LGPLRSAIEQAVPHGSAPRHRGRDPGSWEQPPEAVDRAWATLADEFEALCELHPRLKNTN
NRKHLGTLGTGNHFIEVCLDEAGFVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLP
DKDLAYFEEGARYFGDYVRGVSWAQKFAMKNREVMMDRLIATVRKAIPKPFEAHVEAVNC
HHNYVQQERHFGQDVFVTRKGAVSARRGQMGIIPGSMGARSYIVRGLGNPESFESCSHGA
GRVMSRTKAKKQFTVEDHARATAGVECRKDADVIDEIPMAYKDIDAVMAAQQDLVEVVHT
LKQVVCVKG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacaatttctcatcgaccctcgtcgccgcaacctatttcatggagaagaac
aacatgtcgaagacgaactatcaactgcaggaagtgcccggcggcgtgccggtgaagatg
tggacgcagggcgtgcccgtggaagacgaggcccgccagcagctggcgaacgcggcacgc
ctgccgatcgtcttcaagcacatcgcggcgatgccggacgtgcatctgggcatcggcgcc
accgtgggctcggtgatcccgaccctcaaggccatcatcccggccgccgtgggcgtggac
atcggctgcggcatgatggccgcgaagaccacgctgcgcgccgaggacctgccggacaac
ctgggcccgctgcgctcggccatcgagcaggcggtgccgcacggatcggctccgcgccac
cgcggccgcgatccgggcagctgggagcagccgcccgaagccgtggaccgggcatgggcc
acgctggccgacgagttcgaggcgctgtgcgaactgcacccgcggctgaagaacacgaac
aaccgcaagcacctgggcacgctgggcacgggcaaccacttcatcgaggtctgcctggac
gaggccggcttcgtgtggttcatgctgcattccggctcgcgtggcgtgggcaatgccatc
ggcacgcatttcatcgaactggcgaagaaggacgcggaactccaccagcgcaacctgccc
gacaaggacctagcctatttcgaggaaggggcgcggtatttcggggactacgtgcggggc
gtttcctgggcgcagaagttcgcgatgaagaaccgcgaagtgatgatggaccggttgatc
gccacggtgcgcaaggcgatcccgaagccgttcgaggcgcacgtggaggcggtgaactgc
caccacaactatgtgcagcaggagcggcatttcgggcaggacgtgttcgtgacccgcaag
ggcgcggtgagcgcgcggcgcgggcagatggggatcatcccgggcagcatgggcgcgcgc
agctacatcgtgcgcggcctgggcaatccggagagtttcgagagctgcagccacggcgcc
ggccgcgtgatgagccgcaccaaggcgaagaagcagttcacagtcgaggaccatgcccgg
gcgacggcgggggtcgagtgccgtaaggatgccgacgtgatcgacgagatcccgatggcc
tacaaggacatcgacgccgtcatggcggcgcaacaggacctggtcgaggtggtgcacacg
ctcaagcaggtggtctgcgtgaagggttga
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