Paracidovorax avenae: Acav_0480
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Entry
Acav_0480 CDS
T01445
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
aaa
Paracidovorax avenae
Pathway
aaa02020
Two-component system
aaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Acav_0480
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Acav_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaa03021
]
Acav_0480
Transcription machinery [BR:
aaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Acav_0480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ADX44403
UniProt:
F0Q5A4
LinkDB
All DBs
Position
521304..522893
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AA seq
529 aa
AA seq
DB search
MKPGLSLRISQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERNPDEAPREEFG
LPQADAPVSDADRGAEESLYTPASGTAEVAASSPGEGASEGTETPEAPDAPDWEGDGTVE
MAPDDGEWGGEAPARTRNQMGDEDDTDATELAREHESLTDYLHRQALSLRLSEVDRAALR
FLIESLNDDGYLDESLESLAVSLAGEEDPEQVEELVHRFTVALRLLQSLEPVGVGARGLS
ECMALQLRALQEDGDAEPEVLQAALRICQQPLEMLARRDVRRLAQGCGASEECTRAAMAL
IARLEPRPGRAFAQVERNIIVPDVIVKKSSGRGAAHAFTVQLNPDVMPRLRVHDIYAGAL
RGNRGGEGHQALQQRLQEARWFIKNIQQRFDTILRVSRAIVDRQKNFFVHGELAMRPLVL
RDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VASESPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaggactgtcgctgcgcatctcgcagcatctggcgctgacgccgcagctgcag
cagtcgatccggctgctgcagctgtccacgctggagctgtcgcaggaagtcgagcagatg
ctcgacgagaaccccttcctggagcgcaacccggacgaggctccgcgcgaggagttcggc
ctgccgcaggcggatgcgccggtgagcgatgccgaccgcggtgcggaagagtccttgtac
acgccggccagcggtacggcggaggttgcggcctcgtcgccgggcgagggcgcatccgaa
ggcaccgagacaccggaagcccccgatgcgccggactgggagggcgacggcaccgtcgag
atggcgcccgacgacggcgagtggggcggcgaggcgcccgcccgcacccgcaaccagatg
ggggacgaagacgatacggacgcgaccgaactcgcgcgcgagcacgagtcgctcaccgat
tacctgcaccggcaggcgctgtctctgcgcctgtcggaggtggaccgcgcggcgctgcgc
ttcctgatcgaatcgctgaacgacgacggttacctggacgaatcgctggagtcgctggcc
gtgtcgctggcaggcgaggaagaccccgaacaggtcgaggaactggtgcaccgcttcacg
gtggcgctgcggctgttgcagagcctggagcccgtgggcgtgggcgcgcgcggcctgagc
gaatgcatggcgctgcagttgcgggccctgcaggaagacggcgacgcggagcccgaagtg
ctgcaggcggcactgcgcatctgccagcagccgctggagatgctggcacggcgcgacgtg
cgccggctcgcccagggctgcggtgcgagcgaggaatgcacgcgtgcggccatggcgctc
atcgcgcggctggagccccggccaggccgggcctttgcgcaggtcgagcgcaacatcatc
gttcccgacgtgatcgtgaagaagagcagtggccgaggggccgcgcatgcgttcaccgtg
cagctcaatccggacgtcatgccgcggctgcgcgtgcatgacatctatgcgggggcactg
cgcggcaaccgcggtggcgaggggcaccaggcgctgcagcagcggctgcaggaggcgcga
tggttcatcaagaacatccagcagcggttcgacaccatcctgcgcgtgtcgcgcgccatc
gtggaccggcagaagaacttcttcgtgcatggcgagctggccatgcggccgctcgtgctg
cgcgacatcgccgacgagctgggactgcacgaatcgacgatcagccgggtgaccacggcc
aagtacatggcgactccccagggcacctacgagctgaagtatttcttcggctcggggctg
ggcacggagacgggcggcaatgcgtcgagcacggccgtgcgcgcgctgatcaagcagttc
gtcgcgtcggagagcccggccaagccgctgtcggacagccagatcgcggagatgctcaag
gagcagggcatcgagtgcgcgcgccgcacggtcgccaagtaccgcgaggcgctgaagatc
gcgccggccaacctgcgcaaggcgctgtga
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