Paracidovorax avenae: Acav_1186
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Entry
Acav_1186 CDS
T01445
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acav_1186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaa03019
]
Acav_1186
03009 Ribosome biogenesis [BR:
aaa03009
]
Acav_1186
Enzymes [BR:
aaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Acav_1186
Messenger RNA biogenesis [BR:
aaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acav_1186
Ribosome biogenesis [BR:
aaa03009
]
Prokaryotic type
rRNA processing factors
Acav_1186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ADX45108
UniProt:
F0QCW5
LinkDB
All DBs
Position
complement(1329451..1332570)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMSHVMPEHAAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRHDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQ
ILRMIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPK
YKLERLKHDDPRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAE
PRPETPRTAGPRNGSHAAAAPAPAQAPAPAPAPAPAAPQEQGFFAWLKSLFGFGPSTAPA
PVSAPVPAPAPAPAADAPRDGRRGGRRGGRDGNGGGRDGQRENGGAEGRGRRGERGERPE
RAEGEAPRNGRGPRDSEGREGRPARERDRDREGGRENGRDASVRAEGDYAPRNGREGREG
GRGRREAGDAPRQQPLGTDAGMAAAQDVGIDGQGAAPQERGERGPRNGERRERRERGGDR
RPRGEEGQAEFVDTSPMASLPDLDLTGGEAGGPAAGSASGEEPRRERRSRDRYGRDRRER
TPREGAEAESAPVDESTTAQAVQEVAGEGAAQEAPRRSYFSQGGSAPAPIAATAASEAAP
HGQAPAEPAQAPASIPAAAPAPAVAAVTPAPAPAPVATPAPAPAAAAAVPGLPRVQAFQL
PVEELNRIAESSGLQWVNSDAEKIAAAQAAIAAEPRPVHVPRERPPAVVLDEGPLVLVET
RRDLRDLKLPFEQQPSSVA
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcctgaagaacggcgcctcgccatcgtggac
ggccagaagctgctggactacgagatcgagatcgagggacgcgaacaacgcaagggcaac
atctacaaggcggtcgtcacccgtgtcgagcccagcctggaagcctgcttcgtggattac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcccgccagtatttcgccgag
ggcgtctcgcccagccaggcccgcatcaacgacgtgatccgcgaaggccaggaactgctg
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcgtgtcg
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgtgccgagctcaaggaggcgatggaccagctcgagtacccg
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgctcggcgcccgagctgcaa
tgggacctgaactacctgctcaagctctggaccgccatcgacggcgccgccaggggcggc
aagggcgccttcctgatctaccaggagtcgtcgctggtgatccgcgcgatccgcgactac
ttcaacaacgacatcggcgacatcctcatcgatacggacgacatctatgaacaggcgcag
cagttcatgtcgcacgtcatgcccgagcatgccgccaaggtcaagcgctaccgcgacgac
gcggcgctgttcagccgcttccagatcgagcaccagatcgagtccgcctacgcccgcacg
gtgaccctgccctccggcggcgccatcgtgatcgaccacacggaagcgctggtgtccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggagaccgccacccgcacc
aacctggaagccgccgacgaggtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccacgaccgcgcccgcgtgcagttcggcacgatcagcaagttc
ggcctcatggaaatgagccgccagcgcctgaagccgtcgctcagcgaaggcgcgcacatc
cgctgcccgcgctgcgatggcacgggccacgtgcgcgacacggaaggcttctcgctgcag
atcctgcgcatgatccaggaagagtccatgaaggacaacacggccgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctgaacgagaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtgagcgtgctcatggtacccaacaagaccatggagacgcccaag
tacaagctcgagcgcctcaagcacgacgacccgcgactggaccacatcgccgcgagctac
aagctggccgaggagatggaagacccgaccacggtgacgcgccgctcccaggagccgacg
aacaagcagacccccgtgatcaagggtgtgctgcccgatgcgcccgccccgatcgccgag
ccgcgccccgaaacgccgcgcacggcaggcccacgcaacggctcgcacgcggccgccgcg
cccgccccggcacaggcgcctgcaccggcccccgctccggcaccggcggcaccgcaggaa
cagggcttcttcgcatggctcaagagcctcttcggcttcggaccgagcaccgctccggca
ccggtgtccgcaccggtgccggcgccggctcccgcgcctgccgccgatgccccgcgtgac
ggacgccgtggaggccggcgcggcggacgcgacggcaacggtggcggccgtgacgggcag
cgcgagaacggtggcgcggaaggccgcggacgccgtggcgagcgcggagagcgccctgag
cgcgccgaaggcgaagcgccgcgcaacggccggggtccacgcgattccgagggccgcgaa
ggccggccggcgcgagaacgcgaccgcgaccgcgaaggcgggcgcgagaacggacgcgat
gcatccgttcgcgccgaaggagattacgcgccccgcaatggccgcgaaggccgtgaaggc
ggccgcggccgccgggaggccggtgacgctccgcgccagcagccgctgggcacggacgcc
ggcatggcggcggcccaggacgtcggcatcgacggccagggcgccgcaccgcaggagcgc
ggcgaacggggtcctcgcaacggcgagcgccgggagcgccgtgaacgcggcggcgaccgc
cgtccgcgcggggaggaaggccaggccgagttcgtggatacgtccccgatggcctcgttg
cccgatctggacctgaccggcggcgaagccggcggcccggccgcgggctccgcctcgggc
gaggagccgcgccgcgagcgccggtcgcgcgaccgctacggacgcgaccgccgggagcgc
acaccgcgcgaaggcgccgaagcggaatccgcaccggtggacgaatccaccacggcgcag
gccgtgcaggaggtggctggcgaaggagctgcccaggaagcgccgcgccgcagctacttc
agccagggcggcagcgcaccggcgcccatcgccgcgacggcggcttccgaagcagcgccg
cacggccaggcccctgcagaacctgcgcaggccccggccagcatcccggcggcagcgccg
gcacctgcagtcgccgccgtgaccccagcgccagcgcccgccccggtcgccacgccagcg
cctgcgccggccgcggcagccgccgtgccgggactgccacgcgtgcaggccttccagctg
ccggtggaggagctgaaccgcatcgccgaaagttcgggcctgcaatgggtgaactccgat
gcggagaagatcgccgccgcccaggcagcgatcgccgcggagccccgcccggtgcacgtg
cctcgcgagcggcccccggccgtcgtgctggatgaaggtccgctggtgctggtggagacc
cgccgcgacctgcgcgacctgaagctgccgttcgaacagcagccttcgtccgtcgcctga
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integrated database retrieval system
