Paracidovorax avenae: Acav_1609
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Entry
Acav_1609 CDS
T01445
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acav_1609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaa03019
]
Acav_1609
Enzymes [BR:
aaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acav_1609
Messenger RNA biogenesis [BR:
aaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acav_1609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
ERCC3_RAD25_C
DUF3626
Motif
Other DBs
NCBI-ProteinID:
ADX45530
UniProt:
F0Q4M6
LinkDB
All DBs
Position
complement(1790615..1792000)
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AA seq
461 aa
AA seq
DB search
MAAAPSMPRPPALLPAMPFAALGLSPALVHAAGALGFDTPTPIQVQAIPAVLDGRDVLGR
AQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRPRALVLVPTRELAAQVGEVLRELAGH
LPGPRLKIAIAFGGVSINPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVQALVLDEA
DQLLDLGFAEELQRVLALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAEAPGTAP
DIAQRAIAVEGPRRTQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHG
GLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTG
RAGASGVAVSFVTPEAAPHWQLLARRHGLQALPVEQVAGFEVALAPAAQEAGTQEDAPAR
PGKLPPGTGGIKGRRPSKKDKLRAAAAAAAQAGGTGEPTAD
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgccttccatgccccggccccctgccctcctgcccgccatgccctttgcc
gccctcggcctttcgcccgccctcgtccatgctgccggggccctgggcttcgatacgccc
acgcccatccaggtacaggccattcccgccgtgctggacggacgcgacgtactgggccgc
gcgcagaccgggtccggcaagacggccgccttcggcctgccgctgctgcagcgactcctg
ccgcaagcgcagcaggccggcgcccgccccggaccgcggcgcccacgcgccctggtgctg
gtgcccacgcgcgaattggccgcgcaggtgggcgaggtgctgcgcgaactggcgggccac
ctgcccgggccgcggctgaagatcgcgatcgcattcggcggtgtatccatcaacccgcag
ctgatggcgctgcgcggcggcgcggacgcggtggtggccacgccgggccggctgctggac
ctcgtggagcacaacgccctgtcgctctcgcaggtgcaggcgctggtgctggacgaggcc
gaccagctgctggacctgggcttcgccgaggagctgcagcgcgtgctcgccttgctgccg
gcgcagcgccagaacctgctgttttccgccaccttcgagccgggcgtggcccggctggcc
gagggcctgctgcgcgatccgctgcgcatcgagatcgccgaagcgcccggtaccgcgccc
gacatcgcccagcgcgccatcgcggtggaaggcccgcgccgcacccagctgctgaagcag
ttgctcacgcaggagcccggctggacgcgggtgctggtgttcgtggccacccagtacgct
gccgagcatgtcgcggaaaagctctaccagtccggcatctacgcatcgcccttccacggc
ggcctgagccagggcacgcgccggcaggtgctgcaggaattccgcgacgagcgctggcag
gtgctggtgaccacggacctggccgcgcgcggcatcgacatcgccgggctgccggccgtc
gtgaactacgacctgcctcgcgccgcggccgactacgtgcaccgcatcggccgcacgggg
cgtgccggcgccagcggcgtggcggtgagcttcgtcacgcccgaggccgcgccccactgg
cagttgcttgcccggcgccacggcctgcaggcgctgccggtggaacaggtggcgggattc
gaggtggcgctcgcacccgcagcgcaggaggccggcacccaggaagatgcgcctgcgcgc
ccgggaaagctgccgccgggcacgggcggcatcaagggccggcgtccgagcaagaaggac
aagttgcgggccgctgctgccgccgcggcgcaggcaggcggcaccggggaacccacggcg
gattga
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