Paracidovorax avenae: Acav_1627
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Entry
Acav_1627 CDS
T01445
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acav_1627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaa03400
]
Acav_1627
Enzymes [BR:
aaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acav_1627
DNA repair and recombination proteins [BR:
aaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acav_1627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADX45548
UniProt:
F0Q4P4
LinkDB
All DBs
Position
complement(1806489..1809980)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLPKLIPGKRFTMPRPVGSADALLLARVAEREKAARRTTAIVTADATDAQRLIDEMAFF
APGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQKDRDTGADVVLVPATTALYRL
APPSFLAAYTFHFKVKQKLDEAKFRAQLTLAGYSHVSQVVGPGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDAARAKFRSRWRELLEG
DPTKSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGEDATVVLHGDLEPAFQRFWQD
TKERFRLVQGDPDRPALPPESLFLGIEQFYTRANAHAQLALRPGVEDVEDNPHFQKLGDL
SVVRGAEDPLARLHAHIRNTQHRVLLLAESDGRRESLLDFLRASQLNPPAFDSLAEFQGQ
ADERVGIATAALATGFAWIEEGIDFVTETELFAAGTTTRRRKKQEQVSDVEALIKDLSEL
TLGDPVVHSAHGIGRYRGLIHMDVGQKNPDGTPAMQEFLHLEYADKAVLYVPVSQLQLIS
RYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPQDY
EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITAAIKGIGDGTVDIVVGT
HKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVKSLKAGKEPDLLSPLSVTTDINLHAPA
LLPDDYCGDVHLRLSFYKKLATAKTADQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVIKVDAAPGVTNITFRPQPPVDPMQIIHLIQKNRHIKLAGNEKLRIERELPDAKDR
AQMVRDVLRSLGQPLGAAQGAPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacctccccaaactcatccccggcaaacgtttcaccatgccgcgccccgtgggcagc
gcggacgccctgctgctcgcgcgcgtcgcggagcgcgagaaggccgcccggcgcaccacc
gccatcgtcacggccgacgccaccgacgcgcagcgcctgatcgacgagatggcgttcttc
gcgcccgggttgcgctgcgcgctgttccccgactgggaaacgctgccctacgacacgttc
tcgccgcaccaggacctcatcagcgagcgcctggccacgctctggcgcatcagccagaag
gaccgggacaccggcgccgacgtggtgctggtgccggccaccacggcgctctaccgcctt
gcgccaccctcgttcctcgcggcctacaccttccatttcaaggtgaagcagaagctggac
gaggcgaagttccgcgcccagctcacgctggcgggctacagccacgtctcgcaggtggtg
ggccctggcgaatacgcggtgcgcggcgggctgatcgacctcttccccatgggctcgccc
gtgccctaccgggtggacctgttcgacgacgagatcgactccatccgcaccttcgatccc
gacacgcagcgcagcctctaccccgtgcccgaggtgcgcctgctgcccggccgcgagttc
cccatggacgacgcggcccgggccaagttccgcagccgctggcgcgagttgctggagggc
gatcccacgaaaagccgcatctacaaggacatgggcaacggcgtggccaccgccggcatc
gagtactacctgccgctcttcttcgacgagacggccaccgtcttcgactatcttggagag
gacgccacggtggtattgcacggcgacctggagccggccttccagcgcttctggcaggac
acgaaggagcgcttccgcctggtgcagggcgaccccgaccggcccgcgctgccgcccgaa
tcgctgttcctgggcatcgagcagttctacacccgcgccaacgcgcatgcgcagctcgcg
ctgcggccgggcgtggaggacgtggaggacaacccgcacttccagaagctgggcgatttg
tcggtggtgcgcggtgccgaggatccgctggcgcgcctgcatgcgcacatccgcaacacg
cagcaccgggtgctgctgctcgccgagagcgacggccggcgcgagagcctgctggacttc
ctgcgcgcctcgcagctgaacccgccggccttcgattcgctggccgagttccagggccag
gccgacgagcgggtgggcatcgccacggccgccctggccacgggtttcgcctggatcgag
gaaggcatcgatttcgtcaccgagacggagctcttcgcggccggcaccaccacgcgccgg
cgcaagaagcaggagcaggtgagcgatgtcgaggcgctcatcaaggacctgtcggaactc
acgctgggcgacccggtggtgcacagcgcgcacggcatcggccgctaccggggcctgatc
cacatggacgtgggccagaagaaccccgacggcacgcccgccatgcaggagttcctgcac
ctcgaatacgccgacaaggccgtgctctacgtgccggtcagccagttgcaactcatcagc
cgctacacgggcgtgtccgccgacgaggcgcccctgcacaagctgggcagcggccagtgg
gaaaaagccaagcgcaaggccgccgagcaggtgcgcgattccgccgccgagctgctcaac
atctacgcgcgccgcgcggcgcgcgagggccacgccttccgctacagcccccaggactac
gagcagttcgccaacgatttcggcttcgaggagacggccgaccagaacgccgccatccac
gcggtgatccaggacatgatctcgccccgccccatggaccggctggtctgcggcgacgtg
ggcttcggcaagaccgaagtcgccttgcgcgcagccttcgtggccgtgaccggcggcaag
caggtggcgttcctcgcgcccaccacgctgctggccgagcagcactaccagacgctggtg
gaccgcttctccaagtggccggtgaagatcgcggaggtctcgcgcttccgctccggcaag
gagatcaccgcggccatcaagggcatcggcgacggcacggtggacatcgtggtgggcacg
cacaagctgctgagtgaatccaccaagttccacaacctgggcctgctcatcatcgacgag
gagcaccgcttcggggtgcgccacaaggagcagatgaagcagttgcgcgccgaagtggac
gtgctcacgctcaccgccacccccatcccgcgcacgctgggcatggcgctggaaggcctg
cgcgacctgtcggtgatcgccaccgcgccgcagcggcgcctggcgatcaagaccttcgtg
cgcaacgagggcacgggcgtgatccgcgaggcggtgctgcgcgagttgaagcgcggcggc
cagtgctacttcctgcacaacgaggtggagaccatcgagaaccgccgccagaagctcgag
gagatattgcccgaggcgcgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gagaaggtgatgcgcgacttcgtggcgcagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccacggccaacaccatcatcatgagccgcgccgacaag
ttcggcctggcgcagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgccggacgtggacggcctgaccaagcaggcggcccagcgtctg
gatgcgatccagcagatggaggagctgggttcgggcttctacctcgccatgcacgacctg
gagatccgcggcgcgggcgaggtgctgggcgagaaccagagcggcaacatgctggaggtg
ggcttccagctctacaacgagatgctgtccgaggccgtgaagtcgctcaaggccggcaag
gagcccgacctgctgagccccctgtcggtcaccacggacatcaacctgcatgcgccggcc
ctgctgcccgacgactactgcggcgatgtccacctgcgcctgtcgttctacaagaagctc
gccaccgcgaagaccgcggaccagatcgacgccctgctcgaggaaatcgtggaccgcttc
ggcaagctgccgccgcaggcgcagacgctgatcgacgtgcaccggctgcgcgtgctgtcg
cagccctacggggtcatcaaggtggatgcggcaccgggcgtgacgaacatcacgttccgg
ccccagccgccagtggacccgatgcagatcatccacctgatccagaagaataggcacatc
aagctcgcgggcaacgaaaagctgcgcatcgagcgcgaactgccggacgcgaaggaccgg
gcgcagatggtgcgcgacgtgctgcgcagcctgggccagcccctgggggccgcgcagggc
gctccggcctga
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