Paracidovorax avenae: Acav_1732
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Entry
Acav_1732 CDS
T01445
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acav_1732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaa03019
]
Acav_1732
Enzymes [BR:
aaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acav_1732
Messenger RNA biogenesis [BR:
aaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acav_1732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Fe-ADH
UvrD-helicase
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADX45650
UniProt:
F0Q5M2
LinkDB
All DBs
Position
complement(1923411..1925228)
Genome browser
AA seq
605 aa
AA seq
DB search
MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR
IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK
QSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQ
EHNWSQVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALVA
TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEIE
RFTKQEIPVQVLDGFGPEEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARSEMMER
IRTNKATQGERSGGGKSGGRGAQGQGEGGSNGGQKPQRGRGGAQGQGQGQGNGPRAAHPG
NGGHPRSGNGGGGNGGGRGNRPPRSEGGHRSDDLQPRRENAHLGTQLGTHLGPARHGSGS
GGGQPDPMRTSVDSMSSGRRGGGFRSGGGGGGGYGGGGGGGYGGGRGGNRGPRGGGGGGG
GGYGR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgacgaactgaacctggccccggccattctgaaagccgtgcacgagcagggc
tacgagacccccactcccatccaggcccaggccatccccgccgtgctcgcagggcacgac
ctcctcgccggagcccagaccggcaccggcaagacggcggccttcacgctgccgatgctg
caccgcctcacgcagggcggcaccgcccggcccgccggcggcatccgcgccctggtgctc
acccccacgcgcgagctggccgcgcaggtcgaggaaaacctccgcgcctacgccaagcac
ctggacgtgaagtccaccgtcatcttcggcggcgtgggcatgaacccgcagatcgaccgc
atcaagcgcggcgtggacatcctggtggccacccccggccgcctgctggacctgcagcag
cagggcttcctggacctctccaaggtcgagatcctggtactggacgaagccgaccgcatg
ctggacatgggcttcatccacgacgtgaagaaggtgctggccctggtgccccgcgacaag
cagagcctgctgttctcggccactttcagcgacgagatccgcgaactcgccaacaccctg
ctcaagaacccgcagagcatccaggtcacgccgcgcaacaccacggtgcagcgcatcacg
caggtgatccatcccgtgggccgaggcaagaagaagcaggtgctgctgcacatcatccag
gaacacaactggagccaggtgctggtgttcacgcgcaccaagttcggtgccaacaacgtg
gccgaattcctcaccaagaacggcgtcaatgccatggcgctgcacggcaacaagagccag
agcgcccgcacccaggcgctggccggcttcaagagcggcgacatccgcgcactggtggcc
accgacatcgccgcgcgcggcatcgacatcgacgagctgccgcacgtcgtgaactacgag
attcccaacgttcccgaggactacgtccaccgcatcggccgcaccggccgcgcgggcgcc
agcggcgaggccgtgagcctggtctgcatggacgaggaaggcttcatgatggagatcgag
cgcttcaccaagcaggagatcccggtgcaggtgctcgacggcttcggccccgaggaaggc
gagaaggccgagccgatcgccatgggccgccagaccatctggggcggcgccggcaagccg
ccgagccgcgaggtcatgcaggcagctgccaaggccgcgcgcagcgagatgatggagcgc
atccgcaccaacaaggccacccagggtgaacgcagcggcggcggcaagtccggcggacgc
ggcgcgcaaggccagggcgaaggcggcagcaacggtggccagaagccccagcgcggccgc
ggcggtgcgcaaggccaaggccagggccagggcaacggcccgcgcgcggcccatcccggc
aacggcggccatccgcgctccggcaacggtggcggcggcaatggcggcggccgtggcaac
cgccccccgcgcagcgaaggcggccaccgctccgacgacctgcagccgcggcgcgagaac
gcccacctgggcacgcagctcggcacccacctgggccccgcgcgccatggcagcggcagt
ggcggcggccagcccgatccgatgcgcaccagcgtggacagcatgtccagcggccggcgc
ggcggcggcttccgcagcggtggcggtggtggcggcggctatggcggcggcggtggtggt
ggctacggcggcggccgtggcggcaaccgcggcccccgtggcggcggtggcggcggtggc
ggcggctacggacgctga
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