Paracidovorax avenae: Acav_2565
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Entry
Acav_2565 CDS
T01445
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aaa
Paracidovorax avenae
Pathway
aaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acav_2565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaa03021
]
Acav_2565
03019 Messenger RNA biogenesis [BR:
aaa03019
]
Acav_2565
Transcription machinery [BR:
aaa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Acav_2565
Messenger RNA biogenesis [BR:
aaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Acav_2565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
Spore_III_AA
AAA
AAA_22
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADX46477
UniProt:
F0Q1F2
LinkDB
All DBs
Position
2893776..2895038
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDAVN
GGPPEQNKHKVMFENLTPLFPKEQMKLERDMKGDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLPPEILQKTRILRQFLYNMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctaaacgaactcaaggcactgcacgtgtccgaagtgctgaagcaggccgaagag
ctggagatcgagaacaccgggcgcatgcgcaagcaggagctgatgttcgcgatcatcaag
aagcgcgcaaaggcgggcgagcaggtcttcgccgacggcgtgctggaaatcctgcccgac
ggcttcggcttcctgcgcagcccggacacgagctacaccgcgagcacggacgacatctac
atctcccccagccaggtgcgccgcttcaacctgcacacgggcgacatgatcgagggcgag
gtccgcacgccgaaggacggcgagcgctacttcgcgctgaccaagctcgacgccgtgaac
ggcggcccgccggagcagaacaagcacaaggtcatgttcgagaacctgaccccgctgttc
cccaaggagcagatgaagctcgagcgcgacatgaagggcgacgagaacatcacgggccgg
atcatcgacatcatcgcccccatcggccgcggccagcgcgcgctgatcgtcgcgccgccc
aagagcggcaagacgatgatgatgcagcacatcgcccacgccatcacggccaacaacccc
gacgtgcacctgatggtgctgctggtggacgagcgccccgaagaagtgaccgaaatgcag
cgcacggtcaagggcgagatcatcgcctccaccttcgacgagcccgccgcccgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgcctcgtggagctcaagaaggacgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtcgtgccctcc
tccggcaaggtgctgtcgggcggcgtggacgccgctgcgctgcagcgccccaagcgcttc
ttcggcgccgcgcgcaaggtggaagaaggcggctcgctcaccatcatcgccacggccctg
gtggacaccggcagccgcatggacgaagtgatcttcgaagaattcaagggcaccggcaac
agcgaaatccacctgaaccgccgcctctacgagaagcgcgtgttcccggcgatcgagctc
aacaagagcggcacgcgccgcgaagagctgctgctgcccccggaaatcctgcagaagacg
cggatcctgcgccagttcctctacaacatggacgagatcgaaagcatggaactgatgatc
aagaacatgaaggccaccaagaccaacgtcgatttcttcgacatgatgcgccgcggcggc
tga
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